Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03003 ATGAAGGTGCATCAGTTCGCACGTGGATTCTGGGAGCACGAACCCTCCCTCACGCTCGGCTGCAAACGCTTACGACCCCTTGCTCCCAAGCTTTCCAACACTGACTCCACTGCCTCCATTACTTCATCTCCTGTCACAACTTTCGACCTCAAGAGCTTCATCAAACCAGAAAGCGCCTCCAGAAAACTTGGATCCTCTGATGACAATAAGAGAGACCCTTCTTCACCTCAGGGCCAGGTGGAAACGCATATTCCAGGAGGGACGCGGTGGAATCCGACGCAGGAACAGATAGGGATACTGGAGATGCTGTATAGAGGAGGGATGCGAACACCGAATGCTCAACAGATAGAGCAGATCACAGTCCAACTAAGCAAGTACGGCAAGATCGAAGGGAAGAACGTGTTCTATTGGTTCCAAAACCACAAGGCACGCGAGAGACAGAAGCAGAAGCGTAACAACCTCGGCCTTGCTCATAGTCCTCGTACTCCCACCACCCTAGTGTCACCTTCCTTTAGTTGTAGTGTAATAACCTCTTTGGACACGACAAAACGGGGGGAGGTGGTGGAAAGAGATGAAGAAGATAGCCCTTTGAAGAAGTGTAGGAGCTGGGCATTTGAGTACTTGGAAGAGCAAAGTTGGTCATCATGGAAAGAGGAGGAACACAGAACTCTGGAGCTTTTCCCGTTGCACCCGGAAGGCAGATGA 705 0.5078 MKVHQFARGFWEHEPSLTLGCKRLRPLAPKLSNTDSTASITSSPVTTFDLKSFIKPESASRKLGSSDDNKRDPSSPQGQVETHIPGGTRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITVQLSKYGKIEGKNVFYWFQNHKARERQKQKRNNLGLAHSPRTPTTLVSPSFSCSVITSLDTTKRGEVVERDEEDSPLKKCRSWAFEYLEEQSWSSWKEEEHRTLELFPLHPEGR 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03003 234 MobiDBLite consensus disorder prediction 58 92 - -
Vimu1g03003 234 Pfam Homeodomain 88 147 IPR001356 GO:0003677
Vimu1g03003 234 ProSiteProfiles 'Homeobox' domain profile. 93 148 IPR001356 GO:0003677
Vimu1g03003 234 MobiDBLite consensus disorder prediction 70 92 - -
Vimu1g03003 234 Gene3D - 87 154 - -
Vimu1g03003 234 PANTHER WUSCHEL-RELATED HOMEOBOX 4 1 234 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Vimu1g03003 234 SUPERFAMILY Homeodomain-like 87 151 IPR009057 -
Vimu1g03003 234 CDD homeodomain 88 149 IPR001356 GO:0003677
Vimu1g03003 234 FunFam WUSCHEL-related homeobox 4 87 154 - -
Vimu1g03003 234 SMART HOX_1 85 152 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03003 Vimu-Chr1 42419912 42421139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g03003 1 178 Wox Gene Family AT1G46480 61.702 9.96e-66 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vimu1g03003 Homeodomain 1.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g03003 - - gmx:100500674 409.838