Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g03000 ATGGAAGACCGAGCGCAAGATGCACTACCCCCTGGTTGCCGGTTCTACCCGTCCGAAGAGGTTCTACTCGGCTACTACTTAACCAAGAAGAACGAGAACCGAGAGCAGAGGTTCAACGGTTCTGATTTGATCAAAGAACTGAACCTGTACGATCATGACCCCTTCGAATTACCGGACGCTGCGTGCTTCCCTTACGGTTACCGGGGGAGGAAGAAGCATTGGTTCTGTTACACCGTTAAAGAGACCAAAAGCCCAAGCAGAAAGGTCAAAAGCGGGTTCTGGCTCCGGAAGGGAAGGGTTCGGGATATTCGCGATAACGGTGGGATTGGGAACGCTGTTTTAGGCACCAGGTCCCGTTTCGTTTTCTACGTCGGGAATTCGCTGAAAAAAGCTACCAGAACGGATTGGATTTTGTACGAGTACGCATTGGTTGACCAAATTCTGGCTTCGTTTGTGCTTTGTCGTGTGGTGAATAAGCCTCATCATAAGAATAGTCCATCTGAAATTGGTCGCAGTTGTTGTGCTGAAGAGAGTGCAGCTGTGGTGGTGCGACACATCGGTGTTCAACATGATGGATGTGTTGGAGGTGATGACGTTTGTGATGATGGATTTGTTAATAGAGAGATTGAGGCCGCTGAGAATCCAATTAGGCGTGGTGGTGAACATGATCATGCTGCAACTGTTTCAGTTGCTGAGGGAAGTCAGCCGGTTCAGGAAAGGCTTTCTGGACTTCCCTGTGACGGTGCATTGTTCATTGAAGCTGTGATACCTCAGCAGCATATGCTTTCCATTCTAGAGGAGGATTTCATAGAATTGAATGATATTGTATGA 831 0.4813 MEDRAQDALPPGCRFYPSEEVLLGYYLTKKNENREQRFNGSDLIKELNLYDHDPFELPDAACFPYGYRGRKKHWFCYTVKETKSPSRKVKSGFWLRKGRVRDIRDNGGIGNAVLGTRSRFVFYVGNSLKKATRTDWILYEYALVDQILASFVLCRVVNKPHHKNSPSEIGRSCCAEESAAVVVRHIGVQHDGCVGGDDVCDDGFVNREIEAAENPIRRGGEHDHAATVSVAEGSQPVQERLSGLPCDGALFIEAVIPQQHMLSILEEDFIELNDIV 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g03000 276 ProSiteProfiles NAC domain profile. 9 159 IPR003441 GO:0003677|GO:0006355
Vimu1g03000 276 Pfam No apical meristem (NAM) protein 10 143 IPR003441 GO:0003677|GO:0006355
Vimu1g03000 276 Gene3D NAC domain 18 164 IPR036093 GO:0003677|GO:0006355
Vimu1g03000 276 PANTHER NAC TRANSCRIPTION FACTOR 56 9 176 - -
Vimu1g03000 276 SUPERFAMILY NAC domain 6 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g03000 Vimu-Chr1 42397042 42399920 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g03000 9 186 NAC Transcription Factor Family AT1G32510 31.959 1.04e-23 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu1g03000 NAM 1.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g03000 - - gmx:100785871 392.119