Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02999 ATGCAAGGACAGAGAGGTACAATTGGTTCCTTGCAAGAAACCATAGAATTTGATACATCAAGTACTGCTGCAGTTGATCAACATATTTTCTGGAACAATATGCGAAATCCCGCAGAAAACCATTTTGCACTTCCCCCCAGTGATTTGAACCCGTCTTACGCAAATCCTATAAATCATGAATGGCAGAACCTAAGTGGATGGAGCTTAGGTGAGCCAAGTTCCAGCAATACTCAGAATGAGGTTACTAACAATGAGCAGAAAGGAGAGCTAGGATTATCGTCTTCAATAAGTTCTGGTGCTATAGCTGGTCCAAGACTTGAAGAAAGGCGCTTTGAACCAAACAATACTTTTTCGTTGGATAATGTCAATACAAGTTCCATGTATATGCGCGGCTCCAATTCTCACTTGGTGCCTCAGAATCTCAACCTAAATGCAAGCTTGGCAGATAGTGGCACTGATAATGGCTTTCGTGTGGAACATCCTCCTAACTTGAACAAGTCTAGTGGACCGGTAAATGAGCATATTCAACCTTCAATTGGTTCTGGGCCTTTTCTGCTTCCTTCTGGCACTAATGGCTTTTTGGTTGAGGATACTGATGGTAGGCCTGGTTGTTCTCTGGACACACGCCGTGTATCATGTAAAAGAAAGGCTGTTGAACGAAGTGTTGGACAATCTTCAGGTGGCGGAAGTTCTAGCTATAGTCAGCATACAGATGGTAATACTTGGAACACTCTTCCTACTCAGGATTATGGGGGAAGCAGTTTTAACAGATCTGCCTCAACAGAACAGGTGAATGCCAGACTCGGTCTGAGTACTGGGGATGGAGCCGCTGAGAGCATTCCTTGGTCAAATGTTGCAGCAAGCTCAGAAAGCTTCCACAGAAATTTTCGTGTGAGGATAAACCCTTCAAGTCAACAAATTTCGGTTCCACCCCCTGCAATCTCAAGTGGGAGTGTTCTTAGGAATTCTGGTGTCTCTTCGTCCTCTCCAATGTTGCAACGGTTTCATTCTGTTGATAATTCTCTGGACTTGAGGTCAGCACCACCTGTTATTGATACTATGGTTCCCCAAAGCCAGCCACTTGTTATTCATGTTCCAGCTTTACCAAGGAATGTGCAGCCATTCAGGTGGAATGGAGGTTCCAGCTCAACAAACAATCATCCATCAAACACAGTTATATGTGCAGATAGAAGTAATTTGCCAAACGAGGAAGCAAGTTCAAGAAGTGTGCCGAGAAACATTGTAGAATACCCTATGTTTGTGCCTGCAACCAATTTAAGAAACGTGGTTAGAAATCCGGCTAGAGCTTCAAACAGTGCAAATTTAATTATCCCAGGAAATGTTGGTTCTTCATCGAGGGCAGGCTCAAATTCTGCTGTCAACCCTCCGTCTGCTCCGGCGTGGGTTTCTCGCCCTAATCCTCAGCAGTATCCTCGCAGGTTATCCGAGTATGTTCGTAGGTCCTTGTTTTCTCCTGGTTTGGAAGCTGCTGGAAGTTCAAGCAACAATTATGCTTCCTTCCGTGGCCCTTCTACTTCATCTGGGGTAAACCCATTTGAGAGGCAAGGTGATAGTGAATTTGGAATTCAGTATTCATTACGATCTTTGGCTGCTGGTGGTGAAGGAAGTAGTAGACTTGTATCTGAGCTCCGCAATGTATTGGGCCTCATGCGTAGGGGTGGGAACCTACGATTTGAGGATGTTATGATCCTCGACCATTCAGTGTTCGCTGGAATTGCTGATATGCATGATCGACACAGGGATATGCGACTTGATGTTGATAACATGTCTTACGAGGAGCTACTTGCTTTGGAAGAACGCATTGGAAATGTGAGCACCGGCTTGAGTGAGGAGACCATATTGAAACACATGAAAAATAAGAAGTATTCAGCTGAACCAGGTTCTCAGCAGGAGGCAGAACCCTGTTGTGTTTGTCAGGAGGAGTACAAAGATGGAGATGATTTAGGATCACTGGATTGTGGGCATGATTACCATACCGAATGTATTAAGCAGTGGTTAATGCATAAGAATTTGTGTCCCATTTGTAAGACAACAGGGTTGGCAACATGA 2070 0.4444 MQGQRGTIGSLQETIEFDTSSTAAVDQHIFWNNMRNPAENHFALPPSDLNPSYANPINHEWQNLSGWSLGEPSSSNTQNEVTNNEQKGELGLSSSISSGAIAGPRLEERRFEPNNTFSLDNVNTSSMYMRGSNSHLVPQNLNLNASLADSGTDNGFRVEHPPNLNKSSGPVNEHIQPSIGSGPFLLPSGTNGFLVEDTDGRPGCSLDTRRVSCKRKAVERSVGQSSGGGSSSYSQHTDGNTWNTLPTQDYGGSSFNRSASTEQVNARLGLSTGDGAAESIPWSNVAASSESFHRNFRVRINPSSQQISVPPPAISSGSVLRNSGVSSSSPMLQRFHSVDNSLDLRSAPPVIDTMVPQSQPLVIHVPALPRNVQPFRWNGGSSSTNNHPSNTVICADRSNLPNEEASSRSVPRNIVEYPMFVPATNLRNVVRNPARASNSANLIIPGNVGSSSRAGSNSAVNPPSAPAWVSRPNPQQYPRRLSEYVRRSLFSPGLEAAGSSSNNYASFRGPSTSSGVNPFERQGDSEFGIQYSLRSLAAGGEGSSRLVSELRNVLGLMRRGGNLRFEDVMILDHSVFAGIADMHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETILKHMKNKKYSAEPGSQQEAEPCCVCQEEYKDGDDLGSLDCGHDYHTECIKQWLMHKNLCPICKTTGLAT 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02999 689 MobiDBLite consensus disorder prediction 440 464 - -
Vimu1g02999 689 MobiDBLite consensus disorder prediction 216 258 - -
Vimu1g02999 689 Pfam Ring finger domain 642 683 IPR001841 -
Vimu1g02999 689 ProSiteProfiles Zinc finger RING-type profile. 642 683 IPR001841 -
Vimu1g02999 689 SUPERFAMILY RING/U-box 633 685 - -
Vimu1g02999 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 605 686 IPR013083 -
Vimu1g02999 689 MobiDBLite consensus disorder prediction 64 96 - -
Vimu1g02999 689 SMART ring_2 642 682 IPR001841 -
Vimu1g02999 689 MobiDBLite consensus disorder prediction 223 258 - -
Vimu1g02999 689 FunFam E3 ubiquitin-protein ligase MBR2 610 687 - -
Vimu1g02999 689 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 209 687 IPR045191 GO:0061630
Vimu1g02999 689 MobiDBLite consensus disorder prediction 440 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02999 Vimu-Chr1 42374996 42381008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02999 1 689 C3H Transcription Factor Family AT2G15530 34.626 1.11e-89 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02999 - - lja:Lj0g3v0173889.1 946.421