Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02998 ATGGCTGGTGACATGCACCAACCACAATCCTCTCATGGCAGAACCTTCCCTCCTAATTCAGAAGACTTCTCAACCTTCTTCAACCAACTCCTCCACAACCCTCCCACACTAGGAATGGACCCTAATCATTCTGCTTCTGATTTCATCCCAAACAACCTCAACAACAACAACAACCCTGTTCCTTCCTCTCCCTCAACTTTTCATTTCTCTCACCCCCATCACTACATCCCTGCAACTGATGCCAACACCTTCAAACAACACGACAATAATCGCAAGCCTGATTTCACTTCTTCTTCTGAGAAGAGTGTGGAGGCAACGAAACCTGTCCCACCACCACGTTCTTCGTCAAAGAGGAGTAGAGCTGCAGAGTTCCATAATTTGTCTGAAAAGAGAAGAAGGAGTAGGATTAACGAGAAAATGAAAGCCTTGCAGAATTTAATTCCGAATTCTAACAAGACAGACAAAGCTTCAATGCTAGATGAGGCCATAGAATATTTAAAGCAGCTTCAGCTTCAAGTGCAAATGTTAATGATGAGAAATGGTTTGAGCTTGCATCCAATGTCTTTGCCAGGAGAACTAAGACCTGTGATAATGCCTCAGACTGGGTTGAACCTTGATGAGAGTGATGGACTTCAGAATTCTACTAGTGCAATTGCATCATCTTCAAATGAAGAAAGCTTGGTTCGGCATGCTTTTAGTTTTCCAAAGCAATGCAGCATCTCAGATCAGTCCCATGTTGTACCCTCAGTGACAAGTTTAGCCACCTCCAATGCCCCGTCCACTTTTCATCCTTCTATTAAGGATACACTCTACGACAACATGCCCCAACTGTTTATGGATGCACCAAAGATTGGAAAGGACCCTTCTTCAGACTTGTCTTGA 882 0.4376 MAGDMHQPQSSHGRTFPPNSEDFSTFFNQLLHNPPTLGMDPNHSASDFIPNNLNNNNNPVPSSPSTFHFSHPHHYIPATDANTFKQHDNNRKPDFTSSSEKSVEATKPVPPPRSSSKRSRAAEFHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMMRNGLSLHPMSLPGELRPVIMPQTGLNLDESDGLQNSTSAIASSSNEESLVRHAFSFPKQCSISDQSHVVPSVTSLATSNAPSTFHPSIKDTLYDNMPQLFMDAPKIGKDPSSDLS 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02998 293 Gene3D - 115 179 IPR036638 GO:0046983
Vimu1g02998 293 MobiDBLite consensus disorder prediction 8 32 - -
Vimu1g02998 293 MobiDBLite consensus disorder prediction 1 134 - -
Vimu1g02998 293 MobiDBLite consensus disorder prediction 118 134 - -
Vimu1g02998 293 FunFam Basic helix-loop-helix transcription factor 115 178 - -
Vimu1g02998 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 120 169 IPR011598 GO:0046983
Vimu1g02998 293 MobiDBLite consensus disorder prediction 45 69 - -
Vimu1g02998 293 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 14 267 IPR031066 -
Vimu1g02998 293 Pfam Helix-loop-helix DNA-binding domain 124 170 IPR011598 GO:0046983
Vimu1g02998 293 SMART finulus 126 175 IPR011598 GO:0046983
Vimu1g02998 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 117 180 IPR036638 GO:0046983
Vimu1g02998 293 CDD bHLH_AtPIF_like 120 182 IPR047265 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02998 Vimu-Chr1 42344332 42347408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02998 119 277 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 52.023 2.14e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu1g02998 HLH 3.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02998 - - gmx:100785332 400.208