Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02995 ATGGCTCTTCTACTTGATAACTGTGAGAGCATTTTGCTCTCTTTGGACACACACAAATCAGTTCCTGCACCTTTCCTTACCAAAACATATCAACTTGTCGATGATCCCTCCACCGACCACATAGTCTCTTGGGGCGAGGACGACGCTACCTTCGTTGTTTGGCGGCCCCCAGAGTTTGCCAGAGACCTTCTCCCCAACTACTTCAAACACAACAACTTCTCTAGCTTTGTTCGCCAACTCAATACTTATGGTTTCAGAAAGATTGTGCCTGATAGATGGGAGTTCGCAAATGAGTTCTTCAAGAAAGGAGAGAAGCACTTGTTGTGCGAGATCCACAGAAGGAAAACCCATCAGCAGCATCAGCAACAAGTTCAAGGCTTGCACCATCATCATCAGTTTGGACTCAATGTTCCCCCTTTCTTTCCCTTCCACAACAGACTCAGCGTCTCCCCTCCACATGACTCGGACGAGTTAGCCAATTGGTTCGACTCACCCCCTAGAGGAGTTGCAAGTAGAAACAACATCATCAACGACAACACCAACAGCTACAACACTGTCACTGCACTTTCTGAGGACAACGAAAGACTGAGGAGAAGCAACAACATGCTCATGTCAGAGCTCGCACACATGAAGAAGCTTTACAACGACATTATCTACTTTGTTCAAAACCATGTCAAACCCGTGGCTCCAAGCAACACTTACCCTTCTCTTCTACTATGCAATAACAGCAGCAACAGCATACCCTCTCACATAAACAACGTTTCAACAGTTCAGAGACCGGTGAAACAATTCGTGGCGTGTTATTCCGACTACAGTAAGCAAGCGCGTGCTGTGAACTCTCCCACTAACAGCTCCATCACCATCGTTGAAGATGAACCTAGCAGTAACAGCAGCAAGACCAAGCTTTTCGGAGTGTCTCTTCAATCCAAGAAAAGGGTGCACCCCGAGTACGGATCTAACAATCTTCAAAGTTCAGAAACCAATAAGGCGCGTTTGGTGGTGGAAAATGATGATTTGTTTGGCTTAAATCTCATGCCCCCTTCAACCTGTTAG 1053 0.4634 MALLLDNCESILLSLDTHKSVPAPFLTKTYQLVDDPSTDHIVSWGEDDATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTHQQHQQQVQGLHHHHQFGLNVPPFFPFHNRLSVSPPHDSDELANWFDSPPRGVASRNNIINDNTNSYNTVTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSNTYPSLLLCNNSSNSIPSHINNVSTVQRPVKQFVACYSDYSKQARAVNSPTNSSITIVEDEPSSNSSKTKLFGVSLQSKKRVHPEYGSNNLQSSETNKARLVVENDDLFGLNLMPPSTC 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02995 350 Gene3D - 17 116 IPR036388 -
Vimu1g02995 350 Coils Coil 186 206 - -
Vimu1g02995 350 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu1g02995 350 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 282 IPR027725 -
Vimu1g02995 350 FunFam Heat stress transcription factor B-4 17 115 - -
Vimu1g02995 350 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Vimu1g02995 350 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu1g02995 350 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu1g02995 350 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu1g02995 350 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu1g02995 350 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02995 Vimu-Chr1 42313004 42314164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02995 1 349 HSF AT1G46264 55.764 5.79e-116 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vimu1g02995 HSF_DNA-bind 4.3e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02995 K09419 - gmx:100782841 562.762