Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02989 ATGTCTCCATTTCAGTTATCGTTGGTAGTAGCAGTACTGCTTCTGTGGGTGTGGTCAGAGGCTACAGCTAATGCAAATGATGATGAGCTAAAAAGGAGCAACATAGACGAGTGCTCAATGTTAAAGTCGAAGATTGTCGTGAACATTGGAGCAGCCGTAGAGTTGAATTCTCGAGTGGGAAAAGAACAGAAGATAGCAATGGAAGTTGCAATTGAAGATGTGAATCGACAGAGCTGCTATGAGCTTGCCTTGAACTACAGTTATAACTTTCATCGCAACCCATCATCTCCCACCATGCTCGCTGCTGATCTTGCAAACAGCAAACAAGTGGAAGTTGTCGTAGGAACAAAACTCGATGCAGCAACGTTATTCCTCTCCATTGACGAAAACTCAAAGGATGTTCCCATCATATCTCTAACCTCAACAGCAACTCCAGAAATGGCTTCGATCCCATTGCCACACTTCATCCAAATGGGCCATGAAGTCACCCTTCACATGCACTGCACTGCATCCATCATACACCAATTCCATTGGCGAAAGGTTACAGCAATTTACGAACACAACAACCTCTTTGCCTCTCATTCAGAGATACTGACAAGACTCTCTTACTCTCTGCGTCTTGTCAATGCTGAAATCGATCACCATGTAGCTTTTCCTTCAATGGCCCTTCTCTCAAACCCAACCGAGATCATAGAACAAGAGCTTACAAGGCTCAAGAGCAAGAGCAATAGGGTGTTCTTGCTTATTCAATCTTCCTTGGAGTTTGCCACTTTGCTTTTTCAGAAGGCAAAGCAAATGGGAATGATGGAAAAAGGGTCAGTGTGGATCATTGCAGATGATGTAGCCAACCACCTTGATTCCCTTGATTCTTTTGTCACTTTCAACATGCAAGGCGTCATAGGGTGCAAAACCAACTTCATGGAAGTGAGTGAAAGGTTCAAACGTTTCAAGTTCATGTTTAGGAGAAAGTTTGCACTGGAATACCCTGAGGAAGAAAGACTGCATCCGAGTGTCTTTGCTCTCAGGTCTTACGATGCTGTTTGGACCATTGCTAAAGCCTTGGAGAGCTCACAGGGAAACTTTTCCTTATCAGAAAATATTTTGCATAGTGATCACGAGGGCCTTAGTGGGAAGATAAGTTTCAAAGGAAGAATGTTAATGGAATCACCAACCTTTAAGATTGTCAATGTTGTTGGAAAAGGTTACAAAGAGTTAGCATATTGGTCAATGGAGTCTGGTTTGAGTGAGAGCCTTGTTGAGCATGAGGTAGTGAACACAACAACTGGTGCTGGTTCTGCTAGAAGGCTTTTATGTTCTGTGGATTGGCCTGGTGGGTTGAAAACAGTTCCAAAAGGTTGGGTGTACAATAGCAGTGAGGGAAAGCCTTTGAAAATTGGGGTTCCCGCTGTTGATCCATGTCCTCAGTTTGTGAATATGAGCATTGATAAGAGACTGAATGAAACCCAATTCACTGGTTTCTCAATCAATGTCTTTGAATCAGTTGTGCAACGCCTGCCTTATCACCTGCCTTTTGTTTTTGTGCCATTTTATGGCTCTTACGATCAGATAGTTGAACAAGTGAACAACAAGTACCTTGACGCTGCTGTGGGGGATATACAAGTGATGGAACATAGATATGCATTTGCTGAATTCAGTCATCCATATGTTGAATCTGGCATAGCCATGGTGGTGAAAGTAAAGCCAGATAGATCCAAAGAAACCTGGATGTTCATGGACGCTTTCACAAAAGAAATGTGGATGCTAATGGCAGCAATGCATCTGTTCATAGCATTTGTAATCTGGTTCATTGAAGGTGAAAACAATTCGGAGCTGAAGAGTCTTGGAGCCATTCTCTGGTTTTCTGTCACCACATTATTCTTCATACACAGAGAACCAGTAAATAGCAACTTGGCCAGAGTAGTGCTAGCACCTTGGTTATTTGCTATTCTGATAGTGACACAAAGTTTTACTGCGAGCCTTTCATCCATGATGACAGTGTCCCATCTTGAACCAGCTGTGCCTGATATACAAACACTGCTGAAGACAAATGCAATCATAGGGTCTTTGACTCCATCCATGATTTCCCAAGAGCATTTGAGAACAAAGAAATTGTGGCTTCTTTCACCATTGCCCCTCACGCTGATGTCTTCCTAG 2154 0.429 MSPFQLSLVVAVLLLWVWSEATANANDDELKRSNIDECSMLKSKIVVNIGAAVELNSRVGKEQKIAMEVAIEDVNRQSCYELALNYSYNFHRNPSSPTMLAADLANSKQVEVVVGTKLDAATLFLSIDENSKDVPIISLTSTATPEMASIPLPHFIQMGHEVTLHMHCTASIIHQFHWRKVTAIYEHNNLFASHSEILTRLSYSLRLVNAEIDHHVAFPSMALLSNPTEIIEQELTRLKSKSNRVFLLIQSSLEFATLLFQKAKQMGMMEKGSVWIIADDVANHLDSLDSFVTFNMQGVIGCKTNFMEVSERFKRFKFMFRRKFALEYPEEERLHPSVFALRSYDAVWTIAKALESSQGNFSLSENILHSDHEGLSGKISFKGRMLMESPTFKIVNVVGKGYKELAYWSMESGLSESLVEHEVVNTTTGAGSARRLLCSVDWPGGLKTVPKGWVYNSSEGKPLKIGVPAVDPCPQFVNMSIDKRLNETQFTGFSINVFESVVQRLPYHLPFVFVPFYGSYDQIVEQVNNKYLDAAVGDIQVMEHRYAFAEFSHPYVESGIAMVVKVKPDRSKETWMFMDAFTKEMWMLMAAMHLFIAFVIWFIEGENNSELKSLGAILWFSVTTLFFIHREPVNSNLARVVLAPWLFAILIVTQSFTASLSSMMTVSHLEPAVPDIQTLLKTNAIIGSLTPSMISQEHLRTKKLWLLSPLPLTLMSS 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02989 717 CDD PBP1_GABAb_receptor_plant 48 418 IPR044440 -
Vimu1g02989 717 Gene3D - 573 703 - -
Vimu1g02989 717 FunFam Glutamate receptor 165 334 - -
Vimu1g02989 717 SMART GluR_14 464 658 IPR001320 GO:0015276|GO:0016020
Vimu1g02989 717 SUPERFAMILY Periplasmic binding protein-like II 439 591 - -
Vimu1g02989 717 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 47 694 IPR015683 -
Vimu1g02989 717 Gene3D - 339 460 - -
Vimu1g02989 717 Pfam Receptor family ligand binding region 64 398 IPR001828 -
Vimu1g02989 717 Gene3D - 461 572 - -
Vimu1g02989 717 FunFam Glutamate receptor 574 703 - -
Vimu1g02989 717 Pfam Ligand-gated ion channel 583 682 IPR001320 GO:0015276|GO:0016020
Vimu1g02989 717 Pfam Bacterial extracellular solute-binding proteins, family 3 487 573 IPR001638 -
Vimu1g02989 717 SUPERFAMILY Periplasmic binding protein-like I 46 453 IPR028082 -
Vimu1g02989 717 Gene3D - 40 162 - -
Vimu1g02989 717 Gene3D - 163 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02989 Vimu-Chr1 42270233 42274311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02989 101 687 Ion Channels AT2G29120 31.782 2.17e-90 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02989 - - vra:106763764 1315.06