Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02987 ATGGAAGGTTACGACGGAACCGTGAGGCTCGGCGCCATTAACCTCAGGCACGATCGCGCCGATTTGGACTCCGGCCCCGACGTTTCCGTCTCCTCGCCGGTCACGCGGCAGAAAGCCGCCGCCGCCAAGCAGTTCATCGAGAATCATTACAAGAACTATCTCCAAGGATTGCAGGATCGCAAAGACAGACGCAGGGCGCTGCAGAGGAAAGTGCAAGAATCTCAGATACCGGTTGAGGAGAAGGAGGAAATGATGAGGAACTTGGAGCGCCGAGAAACTGAGTACATGAGGATTCAGAGACGTAAAATTGGAATTGACGACTTCGAACAATTGACGGTGATTGGGAAAGGTGCTTTTGGTGAGGTGAGGCTATGTCGTGCTAAAAGTACGGGAGAGATTTTTGCCATGAAGAAATTGAAGAAGTCAGAAATGCTTAGTCGCGGACAGGTACCAGTTGCCAGACTTAGTGCATTATACGTCAATGCATTGATTGATCTTGATAATTATACAAATTATTGCATGAAACGAGCAAAATTCACAATCAAGGTTTTGGAAAATGGTCTGTCACTTTGGTTTCAACTGGATCGCAACTGCAATTTAGAAAGCCTGGTGGAACATGTTCGATCCGAGAGAAACTTGCTGGCAGAGGTTGATAGCAGATGCATAGTAAAACTCCATTATTCATTCCAAGATTCGGATTTCCTTTATCTCATCATGGAATATTTACCTGGTGGTGACATTATGACATTGTTAATGAGAGAAGATATTCTTTCTGAAGACGTTGCTCGCTTCTACATCGCCGAAAGCATTCTTGCTATTAACTCGATACATCAACACAACTATGTACATAGGGATATTAAACCAGATAACCTGATACTGGACAAAAATGGTCATTTGAAGCTTTCGGACTTTGGCTTATGTAAGCCTCTTGACGATAAGTATTCAACAATTTTATTGGAAAATGAAGATCTTACCAGTCAAGAATCAACCAGTGAAACTGAAGGATATTCTGCTTCTCCTTGGTTGATGCCAAAGGAGCAATTACAGCAGTGGAAACGTAATCGACGTGCATTGGCGTACTCAACTGTTGGAACTCTTGATTATATGGCACCTGAAGTTTTGCTCAAGAAGGGCTATGGAATAGAATGTGATTGGTGGTCTCTTGGGGCAATTATGTATGAGATGCTTATTGGGTATCCTCCATTTTGTTCTGACGATCCAAGGATGGCCTGCCGTAAGATTGTTAACTGGAAAACATGCCTGAAATTCCCAGAAGAACCTAAGATATCAGTAGAAGCAAGGGATTTGATCTTTCGCTTACTATGTGATGTGGACTCAAGACTAGGAACAGGAGGAGTAGAAGAAATAAAGGCTCATCCATGGTTCAAGGGTGTTCAGTGGGACATGCTTTATGAATTAGAGGCTGCTTATAAACCTACAGTCACTGGGGATTTAGATACTCAAAATTTTGAGAAGTTTCCTGAAGTAGATGGCCCACCATCCGTAACGGCAACTGTTGGACCTTGGCGGAAGATGCTGACATCCAAAGATAACAATTTCATTGGATATACTTTTAAGAAGTCAGACATTCTTACATCTCTTGAAAGCTCAGGTATGCAACTTATGGCAATTCATCCTCTTAGTGACTGCCTGTATTTAAACTTCTATGAAGTAAGAAAGATGGTACAGTTCATGCTGAAATCCTAG 1707 0.4271 MEGYDGTVRLGAINLRHDRADLDSGPDVSVSSPVTRQKAAAAKQFIENHYKNYLQGLQDRKDRRRALQRKVQESQIPVEEKEEMMRNLERRETEYMRIQRRKIGIDDFEQLTVIGKGAFGEVRLCRAKSTGEIFAMKKLKKSEMLSRGQVPVARLSALYVNALIDLDNYTNYCMKRAKFTIKVLENGLSLWFQLDRNCNLESLVEHVRSERNLLAEVDSRCIVKLHYSFQDSDFLYLIMEYLPGGDIMTLLMREDILSEDVARFYIAESILAINSIHQHNYVHRDIKPDNLILDKNGHLKLSDFGLCKPLDDKYSTILLENEDLTSQESTSETEGYSASPWLMPKEQLQQWKRNRRALAYSTVGTLDYMAPEVLLKKGYGIECDWWSLGAIMYEMLIGYPPFCSDDPRMACRKIVNWKTCLKFPEEPKISVEARDLIFRLLCDVDSRLGTGGVEEIKAHPWFKGVQWDMLYELEAAYKPTVTGDLDTQNFEKFPEVDGPPSVTATVGPWRKMLTSKDNNFIGYTFKKSDILTSLESSGMQLMAIHPLSDCLYLNFYEVRKMVQFMLKS 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02987 568 Pfam Protein kinase domain 205 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02987 568 ProSiteProfiles AGC-kinase C-terminal domain profile. 463 535 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vimu1g02987 568 CDD MobB_NDR_LATS-like 42 103 - -
Vimu1g02987 568 PANTHER SERINE/THREONINE-PROTEIN KINASE 32 496 - -
Vimu1g02987 568 Gene3D Phosphorylase Kinase; domain 1 53 156 - -
Vimu1g02987 568 SMART serkin_6 108 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02987 568 CDD STKc_NDR_like 106 526 - -
Vimu1g02987 568 SMART pkinase_C_6 463 527 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vimu1g02987 568 FunFam Non-specific serine/threonine protein kinase 361 480 - -
Vimu1g02987 568 FunFam Non-specific serine/threonine protein kinase 246 313 - -
Vimu1g02987 568 Coils Coil 78 101 - -
Vimu1g02987 568 Pfam Protein kinase C terminal domain 481 525 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vimu1g02987 568 ProSiteProfiles Protein kinase domain profile. 108 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02987 568 ProSitePatterns Serine/Threonine protein kinases active-site signature. 281 293 IPR008271 GO:0004672|GO:0006468
Vimu1g02987 568 Gene3D Transferase(Phosphotransferase) domain 1 361 480 - -
Vimu1g02987 568 Gene3D Transferase(Phosphotransferase) domain 1 246 331 - -
Vimu1g02987 568 ProSitePatterns Protein kinases ATP-binding region signature. 114 137 IPR017441 GO:0005524
Vimu1g02987 568 SUPERFAMILY Protein kinase-like (PK-like) 85 514 IPR011009 -
Vimu1g02987 568 Gene3D Phosphorylase Kinase; domain 1 202 245 - -
Vimu1g02987 568 Gene3D Phosphorylase Kinase; domain 1 481 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02987 Vimu-Chr1 42261893 42267741 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02987 1 538 AGC Kinase Gene Family AT5G09890 70.741 0.0 763
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Vimu1g02987 Pkinase 4.7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02987 K08790 - gmx:100814085 883.248