Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02974 ATGGCTGCCAGCAGTGAGCAAACAGTTCCTCTTTCGGTGCTCCTGAAGCGTGAATTGGCTCATGAGAAAATTGAGAATCCTGAGATTGCACATGGTCAAGCTGGCCAAAGCAAGAAAGGGGAGGATTTAACACTGGTAAAAACAGAATGCCAAAGGATGGTGGGGGATGGGGTGTCTACATATTCAGTTTTTGGGATGTTTGATGGACATAATGGATCTGCTGCTGCTATTTATACTAAGGAGAATCTTCTAAATAATGTTTTAAGCGCAATTCCTCCGGATCTTAACAGAAATGAATGGGTAGCAGCACTGCCGAGGGCTTTAGTTGCTGGCTTTGTAAAAACTGATAAAGATTTTCAAGAGAAAGGACAAAAATCTGGAACAACTGTCACCTTTGTGATTATAGAAGGTTGGGTCGTAACAGTTGCATCAGTTGGCGATTCCCGTTGTGTACTTGAATCTTCTGATGGTGAGATTTATTACTTGTCTGCAGATCACAGGCTAGACACGAATGAAGAGGAAAGGGTGCGGATCACCTCTAGCGGTGGTGAAGTTGGTCGGCTAAATACAGGGGGAGGTGCAGAGGTTGGTCCTTTGAGATGTTGGCCCGGTGGCTTGTGTCTCTCACGATCTATTGGAGATATGGATGTTGGTGAATTTATTGTCCCTGTACCGCATGTAAAGCAAGTGAAGTTGTCCACCGGTGGAGGCCGACTTGTTATCTGCAGTGATGGTGTTTGGGATTCTCTGCCTGCAGAAGTAGCACTTGATTGTTGTCGTGGAATGTCACCTGATGCAGCAGCACCACATATTGTTAAAGAAGCTGTACAAGCAAAGGGACTTAGAGATGATACAACCTGCATCGTTGTTGATGTATTACCTCAGGAGAAGCCACCAGCTTCTGCACCACAAACAAAGAAGCCAGTGAAGGGAATGCTCAAGTCTATGTTTCGTAGAAAGTCTTCTGAATCATCTTCTTATAACGACAAAGATTACGTTGAGCCAGATGTTGTAGTGGAATTGTATGAAGAAGGATCTGCCATGCTTTCTGAGAGGTTCAATACTAAATATCCAGTCTGCAACATGTTTAAGTTGTTTATGTGTGCAGTGTGTCAAGTAGAGATAAAACCTGGAGAGGGCATTTCAATACATGAGGGTGAATCCGACTCTGGAAAATTTCGTCCCTGGGACGGACCTTTTCTGTGCTCAAGTTGCCAAGAGAAGAAAGAAGCCATGGAAGGGAAAAGATCATCAGGTGTTTTGATAACCCTTCGTTGTTGCCTGTCTTCCTTTGATAGACGTGTAGAGTTAGCAGTGGAAGTGACGACTGAACTCTCATCTACATTTGCATTTTGA 1356 0.4403 MAASSEQTVPLSVLLKRELAHEKIENPEIAHGQAGQSKKGEDLTLVKTECQRMVGDGVSTYSVFGMFDGHNGSAAAIYTKENLLNNVLSAIPPDLNRNEWVAALPRALVAGFVKTDKDFQEKGQKSGTTVTFVIIEGWVVTVASVGDSRCVLESSDGEIYYLSADHRLDTNEEERVRITSSGGEVGRLNTGGGAEVGPLRCWPGGLCLSRSIGDMDVGEFIVPVPHVKQVKLSTGGGRLVICSDGVWDSLPAEVALDCCRGMSPDAAAPHIVKEAVQAKGLRDDTTCIVVDVLPQEKPPASAPQTKKPVKGMLKSMFRRKSSESSSYNDKDYVEPDVVVELYEEGSAMLSERFNTKYPVCNMFKLFMCAVCQVEIKPGEGISIHEGESDSGKFRPWDGPFLCSSCQEKKEAMEGKRSSGVLITLRCCLSSFDRRVELAVEVTTELSSTFAF 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02974 451 CDD PP2Cc 35 292 IPR001932 -
Vimu1g02974 451 PANTHER PROTEIN PHOSPHATASE 36 291 IPR015655 GO:0004722|GO:0006470
Vimu1g02974 451 SMART PP2C_SIG_2 45 292 IPR001932 -
Vimu1g02974 451 Gene3D - 30 299 IPR036457 -
Vimu1g02974 451 ProSiteProfiles PPM-type phosphatase domain profile. 26 292 IPR001932 -
Vimu1g02974 451 Pfam Protein phosphatase 2C 56 276 IPR001932 -
Vimu1g02974 451 FunFam probable protein phosphatase 2C 12 31 298 - -
Vimu1g02974 451 SUPERFAMILY PP2C-like 32 292 IPR036457 -
Vimu1g02974 451 SMART PP2C_4 20 290 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02974 Vimu-Chr1 42138389 42142251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02974 6 419 PP2C-type Phosphatase Gene Family AT1G47380 78.261 0.0 693
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02974 - - gmx:100816201 771.155