Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02937 ATGAGTTGCAACGGTTGTCGAGTGCTGCGAAAAGGTTGCAGTGAAACATGTCCTTTGAGGTCGTGTCTGCAATGGATCGAATCCGCTGAATCGCAAAGGCATGCCACTCTCTTCCTTGCTAAGTTCTTTGGCCGCACCGACTTAATGTCCTTCATTGCTTCTGTTCCCCAAACCAGAAGACCTGCATTGTTTCAGTCTCTGCTGTTTGAAGGGTGCGGGCGAACGGTAAATCCAGTGAATGGTGCCGTGGGACTTCTGAGCAGCGGAAACTGGCACCTGTGTGAGGCGGCGGTGGAGACGGTGCTCGCCGGAGGCGTTCTTCGAGCGCAGCCGGATACAGTGGCCGGAGTTTCCACTGATTCGCGCCGCCCTTTCCGGCCACTAAGATTGGAACATGATGCGAGGGAGATGAATGAGAACTCATCAAGTTTGATGAACAGAGCAGAGGAACCGGAAACGGTGCGTTACGGTGGTCACAAGAAAAATCAGATCTTAAATTTGTTCGTATAA 510 0.5196 MSCNGCRVLRKGCSETCPLRSCLQWIESAESQRHATLFLAKFFGRTDLMSFIASVPQTRRPALFQSLLFEGCGRTVNPVNGAVGLLSSGNWHLCEAAVETVLAGGVLRAQPDTVAGVSTDSRRPFRPLRLEHDAREMNENSSSLMNRAEEPETVRYGGHKKNQILNLFV 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02937 169 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Vimu1g02937 169 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 139 - -
Vimu1g02937 169 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02937 Vimu-Chr1 41701304 41702689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02937 1 112 AS2 family AT4G37540 79.464 2.04e-61 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu1g02937 LOB 2.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02937 - - gmx:100796966 270.781