Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu1g02908 | ATGGCATTTGCAGGAACAACCCAGAAGTGTATGGCTTGTGACAAAACTGTTTATCTGGTTGACAAGCTGACTGCAGATAACCGAGTGTTCCACAAAGCTTGCTTCAGATGCCACCACTGCAAAGGAACCCTCAAGCTTAGCAACTACAACTCTTTTGAGGGAGTTCTTTACTGCAGGCCACACTTTGATCAACTGTTCAAAAGAACTGGGAGCCTTGACAAAAGCTTTGAAGGGACACCAAAAATTGCCAAGCCAGAGAAAAATTTGGAGGAGAAACCTGGAGCAGCCAAAGTCTCAAGTATGTTTGGTGGAACAAGGGATAAATGTGCTGGTTGTCAGAAAACAGTGTATCCCACTGAGAAGGTTACTGTGAATGGAACACCTTACCATAAGAGCTGTTTCAAATGCTGCCATGGAGGGTGTGTTATCAGTCCTTCAAATTACATAGCACACGAGGGAAAACTCTACTGCAAACACCATCATATCCAATTGATCAAGGAGAAGGGAAATTTAAGCCAACTCGAAGGTGATCATGAGAAGAGTGAAAATAATGGGAAAACCAACGGTGAAGAAGTTGCTGCGGAGGCATGA | 591 | 0.4382 | MAFAGTTQKCMACDKTVYLVDKLTADNRVFHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIAKPEKNLEEKPGAAKVSSMFGGTRDKCAGCQKTVYPTEKVTVNGTPYHKSCFKCCHGGCVISPSNYIAHEGKLYCKHHHIQLIKEKGNLSQLEGDHEKSENNGKTNGEEVAAEA | 196 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu1g02908 | 196 | Gene3D | Cysteine Rich Protein | 104 | 173 | - | - | |
Vimu1g02908 | 196 | Gene3D | Cysteine Rich Protein | 4 | 74 | - | - | |
Vimu1g02908 | 196 | PANTHER | OS06G0237300 PROTEIN | 4 | 91 | - | - | |
Vimu1g02908 | 196 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 101 | 134 | - | - | |
Vimu1g02908 | 196 | MobiDBLite | consensus disorder prediction | 170 | 186 | - | - | |
Vimu1g02908 | 196 | MobiDBLite | consensus disorder prediction | 170 | 196 | - | - | |
Vimu1g02908 | 196 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
Vimu1g02908 | 196 | SMART | lim_4 | 108 | 160 | IPR001781 | - | |
Vimu1g02908 | 196 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
Vimu1g02908 | 196 | FunFam | LIM domain and actin-binding 1 | 4 | 74 | - | - | |
Vimu1g02908 | 196 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 35 | - | - | |
Vimu1g02908 | 196 | ProSiteProfiles | LIM domain profile. | 107 | 167 | IPR001781 | - | |
Vimu1g02908 | 196 | Coils | Coil | 164 | 184 | - | - | |
Vimu1g02908 | 196 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 135 | 174 | - | - | |
Vimu1g02908 | 196 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 76 | - | - | |
Vimu1g02908 | 196 | CDD | LIM1_SF3 | 6 | 68 | - | - | |
Vimu1g02908 | 196 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - | |
Vimu1g02908 | 196 | FunFam | LIM domain and actin-binding 1 | 103 | 173 | - | - | |
Vimu1g02908 | 196 | CDD | LIM2_SF3 | 109 | 169 | - | - | |
Vimu1g02908 | 196 | Pfam | LIM domain | 10 | 64 | IPR001781 | - | |
Vimu1g02908 | 196 | Pfam | LIM domain | 109 | 163 | IPR001781 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu1g02908 | Vimu-Chr1 | 41469591 | 41474333 | Dispersed/Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | LIM | Vimu1g02908 | LIM | 1.5e-12 | CL0167 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu1g02908 | K09377 | - | gmx:100499947 | 404.831 |