Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02892 ATGTTCTTCCACGAAGAAGCCCAACCGGTTCACTCCTCCTGTTTCCCGCTTCTCGAAACCATGTTCACGCCTACCGAAATAGAGGAGCTATTCTCCCTCGTTAACAAACCGCTCAGCCCGGAGTCCGGTTCGCAGGAATCGAACCGGGTGGTCAGGTCCACGCACGAGAGAAAGCTCCGGCGAATGCAGTCGAACCGGGAGTCAGCCCGACGGTCCCGGTGGAGAAAGAAGCGGCATTTAGAGAACCTCACGAACCAAGCGAACCGGCTCAGAATGGAAAACCGAGAATTAAAAAACCGGTTATGCTTAACCATGCACCAGAATCTTCTTGTCTCCTTGGAGAATGAACGTCTTAGATCCGAATCCGTGACCCTTATGGCTACACTCTCAAATCTTTATCAAATTTTAGCCACCATGATTTCACAACAGTAG 432 0.5069 MFFHEEAQPVHSSCFPLLETMFTPTEIEELFSLVNKPLSPESGSQESNRVVRSTHERKLRRMQSNRESARRSRWRKKRHLENLTNQANRLRMENRELKNRLCLTMHQNLLVSLENERLRSESVTLMATLSNLYQILATMISQQ 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02892 143 FunFam BZIP transcription factor 55 107 - -
Vimu1g02892 143 CDD bZIP_plant_GBF1 58 107 IPR045314 GO:0003700|GO:0006355
Vimu1g02892 143 Coils Coil 80 100 - -
Vimu1g02892 143 Gene3D - 55 137 - -
Vimu1g02892 143 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 55 101 IPR004827 GO:0003700|GO:0006355
Vimu1g02892 143 SUPERFAMILY Leucine zipper domain 57 108 IPR046347 GO:0003700|GO:0006355
Vimu1g02892 143 Pfam bZIP transcription factor 57 101 IPR004827 GO:0003700|GO:0006355
Vimu1g02892 143 SMART brlzneu 53 117 IPR004827 GO:0003700|GO:0006355
Vimu1g02892 143 MobiDBLite consensus disorder prediction 50 69 - -
Vimu1g02892 143 Coils Coil 52 72 - -
Vimu1g02892 143 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 60 75 IPR004827 GO:0003700|GO:0006355
Vimu1g02892 143 MobiDBLite consensus disorder prediction 38 75 - -
Vimu1g02892 143 PANTHER BZIP TRANSCRIPTION FACTOR 44 41 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02892 Vimu-Chr1 41293955 41294767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02892 12 136 bZIP Transcription Factor Family AT3G49760 37.778 2.29e-21 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu1g02892 bZIP_1 3.6e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02892 - - var:108337908 251.521