Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02887 ATGGATGCACCCGCCAAACCAACCATTCCATGGAAGCTCCGTGTAACGACATCTCTTCTTTCTCTCCTTCTCAAAGCCTCATGCCGCTCTAACGGCACCATCAACCGTCGTCTCTTCAACCTCTTTGACTCCCAACTCCCTCCTAATCCCAACCCTATCGACGGCTTCACCACCTCCGACGTCACTGTCAATGCCACACGAAACCTTTGGTTTCGCCTCTTCTCTCCCACTACTTCCGCCTCTGCCGCCACCCTTCCTATCGTCGTCTTCTTCCACGGCGGCGGCTTCACGTTCCTTTCCTCGGCCACGACCAAGTACGACACTTTCTGCCGCTCCATCAACGCCGTCATCAAACCTGCAGGGAATCAGAGGACGCCTCCGATGAGTTTCTCTCCTTCCTCCGCCACCACGGCTACTTCTGCCGCCATCGCCAAACGAAGAGGGTTCAGACGTGGAGAGGTCTTCGAGTCCAACCTCCGTCTTGGTCAGGTAAAGGTCCGATCTTTTGACGCTGCAATTTGGTATGGTTGTTGCTCATTGACGAGGGTCTCTTTTGTGTGGAGTTGA 567 0.5467 MDAPAKPTIPWKLRVTTSLLSLLLKASCRSNGTINRRLFNLFDSQLPPNPNPIDGFTTSDVTVNATRNLWFRLFSPTTSASAATLPIVVFFHGGGFTFLSSATTKYDTFCRSINAVIKPAGNQRTPPMSFSPSSATTATSAAIAKRRGFRRGEVFESNLRLGQVKVRSFDAAIWYGCCSLTRVSFVWS 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02887 188 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 88 104 IPR002168 GO:0016787
Vimu1g02887 188 Gene3D alpha/beta hydrolase 2 118 IPR029058 -
Vimu1g02887 188 SUPERFAMILY alpha/beta-Hydrolases 6 113 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02887 Vimu-Chr1 41268627 41269193 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02887 6 130 Carbohydrate Esterase AT3G63010 29.167 1.26e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02887 - - vra:106770190 224.172