Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02874 ATGGGCAGAGCTCCTTGCTGCGACAAAGCAAACGTGAAGAAAGGTCCATGGTCTCCAGAAGAAGATGCTAAGCTCAAATCCTACATAGAAAAACATGGCACTGGTGGTAACTGGATTGCTTTGCCTCAAAAAATAGGCCTTAAGCGATGTGGCAAGAGTTGCCGCCTTAGGTGGCTGAACTATCTTCGCCCTAATCTCAGGCACGGTGGTTTCTCCGAGGAAGAAGATAACATTATCTGTAGCCTTTACATCAGTATCGGAAGCAGGTGGTCGGTGATTGCTGCACAATTGCCGGGAAGAACTGATAATGACATAAAGAACTACTGGAACACGAGGCTGAAAAAGAAGCTTCTAGGGAAGCATCGAAGAGAGCCACGTAATAGAGGCAATTACAACAGTGTTAAGCAAGAAATTAGTGATGCTAATAGAAGAAGTAGCGATGGTGATTCTTCTTCCTTATCCATGGTTCAGGAAAATAGTAGCACTGGTCAACAACATCAACACTTATGTTGGCCACAGAACATTAACATGCCAGTGCTGCCACTACCCATAGTACCCTTTCCATACACAACAAACCAAGGTCCAGGTTTCAACGACCAAGATTCCATCAAGAAACTCCTGATCAAACTAGGAGGAAGATTTTCAGGGGATTATTACCAGCCTACCCTTGATGGGTTGAACCTTCAATTCTCATCACAAGGGCAACAAGTTTACCAAGAACAAGTCCATGTTGGTTCCTCTTCTTCTTCAGCCTGCATTGTTCCCAACAACGAGGTACAGTTTGCACAAACTGGTCAATACTCTGGAGTTGATGACATGATGCAAGGACAGGATGGTAATTTCACCCCATCATTTGATGAAATGGTGCCTTCTTCTAATTATTCAGATGGGTTAGAGTTCTTGTACAATGAGGGCATCATCCACCACAAGATAACAGATTCTACTATAACTACTACTTGTGACCAAAACACCACCACCAGCACCACCACAAATTGGGATGAAACCACCACTTCCATTTATCACCATGATTCACTTGCTTCCCATTTTGAAGGTCAAGAATGTGCTTTGCAAGAGTTTAGCTACCCAGGGGCACAATAA 1098 0.4372 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNLRHGGFSEEEDNIICSLYISIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRREPRNRGNYNSVKQEISDANRRSSDGDSSSLSMVQENSSTGQQHQHLCWPQNINMPVLPLPIVPFPYTTNQGPGFNDQDSIKKLLIKLGGRFSGDYYQPTLDGLNLQFSSQGQQVYQEQVHVGSSSSSACIVPNNEVQFAQTGQYSGVDDMMQGQDGNFTPSFDEMVPSSNYSDGLEFLYNEGIIHHKITDSTITTTCDQNTTTSTTTNWDETTTSIYHHDSLASHFEGQECALQEFSYPGAQ 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02874 365 CDD SANT 71 113 IPR001005 -
Vimu1g02874 365 FunFam Transcription factor RAX3 7 68 - -
Vimu1g02874 365 Gene3D - 7 68 - -
Vimu1g02874 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Vimu1g02874 365 SMART sant 13 64 IPR001005 -
Vimu1g02874 365 SMART sant 67 115 IPR001005 -
Vimu1g02874 365 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vimu1g02874 365 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vimu1g02874 365 Gene3D - 70 146 - -
Vimu1g02874 365 CDD SANT 16 62 IPR001005 -
Vimu1g02874 365 PANTHER OS09G0431300 PROTEIN 1 288 - -
Vimu1g02874 365 FunFam Transcription factor MYB36 70 142 - -
Vimu1g02874 365 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vimu1g02874 365 MobiDBLite consensus disorder prediction 131 167 - -
Vimu1g02874 365 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vimu1g02874 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Vimu1g02874 365 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vimu1g02874 365 MobiDBLite consensus disorder prediction 119 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02874 Vimu-Chr1 41079579 41081113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02874 1 209 MYB Transcription Factor Family AT3G49690 61.244 2.08e-85 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu1g02874 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02874 K09422 - gmx:100800290 574.318