Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02872 ATGAGACCCCACAAATGCACAAACAAACCCAATCATAATAAATGCTCTTCATTCACACAATCTCACACCCTCTTTTACAACTCTCTTTCATCTATATATGTTAACACAACACTTCAACCTCTGCAACAATCAAACCCTTCAACTCTTTCCACCTTCAGAATTCATCATACTATGAGTTTTCACGAAACACCAAACATAGGACTTGGTCTTGGTCTTGGTCTTGGTCTTGGCCTTGGTCTTGTTTCCTTCCATGATCAATCAGAGAACTGCATGAAGAGTGATGCCCACAACATCAGAAGGGTGGAGAATCCATCAGACTGTAACAAGACATACCCTTCACTTACTTTAGGACCACCAGAAGATGATGATCATGAAGAACTGAAAAATGATCGACCAAGTTCAAAGACAGAGTCCTATGAATATTTTCGGTCTTCTCCCAGTGTGGTTTCTTCTTTTTCCAACTCCTCTAGCATCAAGAGGGAGCGAGATCAGGCCATGGGAGAAGAATTTGATGTAGAAGTAGAGAAAGTTCAAACAAGGGTAGCAGATGCTGACGAAGATGGTAACCCCAGAAAGAAACTTAGACTCACCAAAGAACAATCAGCAATCTTGGAAGAAAACTTCAGAGAACATTCTACTCTCAATCCGAAGCAAAAGCAAGAATTGGCAATGAAGCTGAATCTGCGAACCAGACAAGTAGAGGTGTGGTTTCAGAACAGGAGAGCCAGTCTGACAGAAGAAAACAAGAGGTTGCAAAAGGAGGTTGAAGAACTAAAGTCAATGCAAGCAATGTCAGTGCCTCTTTACATGCAGATTCCAGCAGCCACACTTTCCCTATGCCCTTCT 846 0.4196 MRPHKCTNKPNHNKCSSFTQSHTLFYNSLSSIYVNTTLQPLQQSNPSTLSTFRIHHTMSFHETPNIGLGLGLGLGLGLGLVSFHDQSENCMKSDAHNIRRVENPSDCNKTYPSLTLGPPEDDDHEELKNDRPSSKTESYEYFRSSPSVVSSFSNSSSIKRERDQAMGEEFDVEVEKVQTRVADADEDGNPRKKLRLTKEQSAILEENFREHSTLNPKQKQELAMKLNLRTRQVEVWFQNRRASLTEENKRLQKEVEELKSMQAMSVPLYMQIPAATLSLCPS 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02872 282 MobiDBLite consensus disorder prediction 118 137 - -
Vimu1g02872 282 Gene3D - 197 243 - -
Vimu1g02872 282 MobiDBLite consensus disorder prediction 103 140 - -
Vimu1g02872 282 CDD homeodomain 190 242 IPR001356 GO:0003677
Vimu1g02872 282 ProSiteProfiles 'Homeobox' domain profile. 187 247 IPR001356 GO:0003677
Vimu1g02872 282 SMART HOX_1 189 251 IPR001356 GO:0003677
Vimu1g02872 282 Coils Coil 241 264 - -
Vimu1g02872 282 SMART halz 231 272 IPR003106 GO:0006355|GO:0043565
Vimu1g02872 282 Pfam Homeodomain 191 242 IPR001356 GO:0003677
Vimu1g02872 282 SUPERFAMILY Homeodomain-like 187 244 IPR009057 -
Vimu1g02872 282 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 243 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02872 Vimu-Chr1 41031474 41033124 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02872 158 282 Homeobox Transcription Factor Family AT4G37790 52.318 3.03e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vimu1g02872 Homeodomain 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02872 K09338 - gmx:100807072 316.62