Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02865 ATGGGAAGAGCTCCTTGTTGTGACAAAGCCAATGTCAAAAGAGGACCATGGTCCCCTGAAGAAGATGCAACACTCAAAAGCTATCTGGAATCTCATGGAACTGCTGGAAATTGGATTGCATTGCCCAAAAAAGCTGGCCTTAGACGGTGTGGGAAGAGTTGCCGCCTACGGTGGCTGAATTATCTGAGACCAGACATCAAACATGGAGGCTTCACTGAAGAAGAAGACAACATCATTTGCAATCTCTATGGCCAGATGGGAAGCAGGCAAGTTTTATTTTCAAATTATTTCAATTTCACACTATAA 306 0.4346 MGRAPCCDKANVKRGPWSPEEDATLKSYLESHGTAGNWIALPKKAGLRRCGKSCRLRWLNYLRPDIKHGGFTEEEDNIICNLYGQMGSRQVLFSNYFNFTL 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02865 101 PANTHER OS09G0431300 PROTEIN 1 89 - -
Vimu1g02865 101 SUPERFAMILY Homeodomain-like 15 90 IPR009057 -
Vimu1g02865 101 Gene3D - 6 68 - -
Vimu1g02865 101 CDD SANT 16 62 IPR001005 -
Vimu1g02865 101 SMART sant 13 64 IPR001005 -
Vimu1g02865 101 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vimu1g02865 101 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vimu1g02865 101 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Vimu1g02865 101 FunFam Transcription factor RAX3 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02865 Vimu-Chr1 40912563 40913504 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02865 1 89 MYB Transcription Factor Family AT5G65790 84.270 6.17e-54 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu1g02865 Myb_DNA-binding 8.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02865 K09422 - vum:124825424 199.134