Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02864 ATGATTAATTTGTGTTCTTGCTTGTTCAGATGGTCTGCCATAGCCTCTAAACTTCCTGGCAGAACCGACAATGATGTGAAAAACTACTGGAACACGAAACTGAAGAAGAAGATAATGGCAGGAAAAGTTAGTCTCAAAACATTGACTGAAAATGACACTCTTCCTTCAACTTCAACCCCATTACCAACCAACAAAAGTCTGAATACTCAAAATTCACCTTTCAATGCTTCACCAAATCAGCTAGCCTTGGTGCTACCAATCTTAGAAGCAAATGATAACAATGCATTCACCGATAATCAAAAAAACATCATTAGTTTTGACCAAACAAAGCATCATGGGTTGTACAGTCCACAAGTCATGCATGGTGTCTCACAAATTGGCGCAAGTTCAAGGATCATCAATAACACCAACGAAAGTAACAGTAACAGTCACATGGTGTCATTGTCTCAAGAAGGTTCAAGTAGCATTTCGGATTCATCTTCCATTGCAATGAGTTATAATAAGCCTCAACAGCAGCAGCAAGAGCAACAACAACATTCTATTGATGAATCTATGGAAATGTTGGTGGATTTTGGCTTTGGATTTCCCTATGATTTTGCTAACTGCCATTATGAGAGAGTTGGTGAAACTTTTGCTCCAGAGTGGGTTGATTTTAGCTATGCTGACATTAAGCCACATTGA 681 0.3877 MINLCSCLFRWSAIASKLPGRTDNDVKNYWNTKLKKKIMAGKVSLKTLTENDTLPSTSTPLPTNKSLNTQNSPFNASPNQLALVLPILEANDNNAFTDNQKNIISFDQTKHHGLYSPQVMHGVSQIGASSRIINNTNESNSNSHMVSLSQEGSSSISDSSSIAMSYNKPQQQQQEQQQHSIDESMEMLVDFGFGFPYDFANCHYERVGETFAPEWVDFSYADIKPH 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02864 226 CDD SANT 10 34 IPR001005 -
Vimu1g02864 226 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 38 IPR017930 -
Vimu1g02864 226 Pfam Myb-like DNA-binding domain 10 32 IPR001005 -
Vimu1g02864 226 SUPERFAMILY Homeodomain-like 9 42 IPR009057 -
Vimu1g02864 226 Gene3D - 2 58 - -
Vimu1g02864 226 PANTHER OS09G0431300 PROTEIN 10 179 - -
Vimu1g02864 226 MobiDBLite consensus disorder prediction 135 180 - -
Vimu1g02864 226 ProSiteProfiles Myb-like domain profile. 10 34 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02864 Vimu-Chr1 40910921 40912312 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02864 10 106 MYB Transcription Factor Family AT5G23000 35.455 1.58e-12 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu1g02864 Myb_DNA-binding 4.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02864 K09422 - gmx:100789985 245.358