Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02850 ATGGGTATCTGCATATCAGTTTCAGAAAAAGATGATGATGATGAGAATGTGACAATATTTGAAGAAAGGAAGAAGGTCCTGAATGGGAGTCAGAGACTCTTCTCTGTTTACTCCAAACAGGGTACCAAAGGACTCAACCAAGATGCTGCCTCTATTCACCAGGGCTATGGAACGGAAGATGGAACATTTTGTGGTGTTTATGATGGTCATGGAGGGAATGGACACAGAGTGAGTAAAATAGTAAGCAGTCAATTATCTTCCCTCATTCTGGAACAAAAGAATGTTCTTGAAAAGATTGATGCTATAGAAAATGGTTGTCACAACACCACCCCAAAAAACCATGTTGGCACAATGAATGAAAACTCAGATGCAAACAACTTTCAGAAATGGAAAGAAGCAATTGTTAGTGCCTTCAAGGTCATGGAGAAAGAGGTCAAGCTTCAACATAATCTAGATTGCTCTGGCAGCGGAACCACTGCTGTAGTTATCATAAAACAGGGTGAAGGTCTTGTCATAGCAAATCTGGGTGATTCGAGAGCAGTGATGGGAACAATATGTGAAGAAAAACTCGTAGCCACCCAATTGACCACGGATTTGAAGCCCGAATTACCTCGAGAAGCAGAAAGAATAAGAAGGTGCAATGGTTGTGTGTATGCATCAAAGGAAGAACCAGAAATCCAGAGAGTGTGGATGCCCAACAATGAACACTCCCCTGGCCTAGCCATGTCTCGATCTTTTGGAGATTTCTTGCTCAAGGATTATGGTGTTATTGCTATCCCAGATATTTCTCACCACCCTTTAGCATCAAGTGATCAATTTATTGTTCTTGCTAGTGATGGGGTGTGGGATGTACTAAGTAACGATGAGGTTGCATCAATTGTGTGGAGTGCAGAGAGTGAAGAGGTTGCAGCAAGAGCAGTAGTGGAAGCAGCCACTGCTGCATGGAAAAACAAGTTTCCTTCATATATGGCAGATGACTGCACTGTGGTTTGTCTCTTCTTGCACCAGAAACCACAACTTCAGCCATTTAAAAACTAA 1038 0.422 MGICISVSEKDDDDENVTIFEERKKVLNGSQRLFSVYSKQGTKGLNQDAASIHQGYGTEDGTFCGVYDGHGGNGHRVSKIVSSQLSSLILEQKNVLEKIDAIENGCHNTTPKNHVGTMNENSDANNFQKWKEAIVSAFKVMEKEVKLQHNLDCSGSGTTAVVIIKQGEGLVIANLGDSRAVMGTICEEKLVATQLTTDLKPELPREAERIRRCNGCVYASKEEPEIQRVWMPNNEHSPGLAMSRSFGDFLLKDYGVIAIPDISHHPLASSDQFIVLASDGVWDVLSNDEVASIVWSAESEEVAARAVVEAATAAWKNKFPSYMADDCTVVCLFLHQKPQLQPFKN 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02850 345 CDD PP2Cc 32 296 IPR001932 -
Vimu1g02850 345 Gene3D - 15 337 IPR036457 -
Vimu1g02850 345 SMART PP2C_4 23 332 IPR001932 -
Vimu1g02850 345 PANTHER PROTEIN PHOSPHATASE 34 332 IPR015655 GO:0004722|GO:0006470
Vimu1g02850 345 SUPERFAMILY PP2C-like 27 336 IPR036457 -
Vimu1g02850 345 ProSiteProfiles PPM-type phosphatase domain profile. 33 334 IPR001932 -
Vimu1g02850 345 Pfam Protein phosphatase 2C 58 312 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02850 Vimu-Chr1 40776654 40779072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02850 1 339 PP2C-type Phosphatase Gene Family AT5G26010 48.718 2.35e-98 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02850 - - gmx:100815312 534.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02850 1 40776654 40779072 Vimu1g02850 1 40776654 40779072 ECH
Vimu1g02850 1 40776654 40779072 Vimu10g03168 10 42231784 42233359 PCT