Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02845 ATGAGTGGCACTGCACCAAAGGCTACTACCAATGTCTACTGTGTTCTCTCTCTCACTCTCTCTCTCCTTATTGCTATTACTCCTTCGTGGCCCTTCTCCCTCCATCTATCTCAAACACCTTTTTCATCCATCTCCAACACTAGGTGCAACATCTACCTCTTTTCGCTCTTTGTTTGTTATGAGAGTTCTCTACTGCTATTTTTGTTGCTGCCTTGTTCTAATTTTCTTTTTATGTTTGTAGCATGGAGCTATTTCCATTTTCTTCAAGAGAGTAAGATGGAGAATAATATGTACAGTGCTTCACTGGACATTGCTGGCAGAAATTCTGCTGTCATAGAAGAAATTGCACAGCATTTAGCACCGAAGCCACTGATTCAATGCTACTCATTTGACCTCAATAACCAAAACCACATTATAAATGGAATTCCAGTTCTTGCTGCAGAACAAGGTGAACCTAGAAGTGATGTCCATGTAGATGGTTGCTTCGTAAACCAAGCTAGAATTGCTGATTCCAATTCATTTGTCTCAATACAAGGAAAGAGTATTGTAGGAGATGCCTCAAATCCCATCAACAACAGTGCCATTCAAGAGCATTTAGCTGGAGGAAGGCCAATTGCTTCTGATGCTTCACTTGCTGATAGAATAGGCCTTCAAGAAAATCTGCAGAGTTCAGCAGCTTTGCCTCATTCAATGAGTTCATTGGAGGCACTGGGACCATACATCTTCAGTAATTGGCAAGACACATCAAACCCTTTAGCTGCAACTTTTGGTGATCATGCCTATGATGAATTATCAAGTATTCAGAAGTGGAATGTGAACAAGTTTCTGAAAGCTCCAGAGGCCAATGGGACTGAGATCCAGGCTTATTCTTCCATAGGAAACCTGGTTCAAAATGGATGGACATCATCAAATGTTGCAAGCTTGGGAAATTTTACCTATAATTCCTCTAATTGCAGTAAAGAACTGTCACTAAGTCTTTCAAGATCTCCTCCAACTACAGGGCAGTGCTCAGAGATGAGCTGCTCCAACGCATCTCGTAGCATGAATGGAACAAGTTCAGGCTTGGAGCAACCTTCCTGCAGCAGCAAGGAACTGTGTATGAGATTAGGTTCCAACAAACATGTCCAGTTTTCACCAGCAATATTGGGGTCCAGATATCTTGCTGGAGTTCAAGAGATATTTGCTCAAATTGCCACATACTCATTTGAAAATGTAGAGCTGATGAATTACCCAGCTTCTGGTGTTAGAGGAGGAGGAAATAAGTCAGCTTCAGCTTTCACACCAAAGAGAAGGGTAGCGAGTAATCAGAATGAAAATTCCATGTATGGAGCACATGCAGAAGAATCTCCATCGGAAAGACATGCAGCTGATTCAAACAAATCCCAACTTCTCATGCTTCTACAACTGGTGGACAATGGATATAGCCAGTGTTTGGATGAGGTTCATACTGTGGCATCTGCATTCCATGCTGCTACTGAGTTGGATCCACACATGCATGCACATTTTGCACTTCAAACCATCTCTCTCTTGTACAAGGACTTGAAAGAGAGGATTAGCAATTGTATTCGTGCAATGGGACCAGATTTTAACAGCTTGTGTTCAGAAGAAGAGAAGGAATGGTCTCTTGAAACTTCGTTCATTCAAAAGCAATGGGCTCTGCAGCAGTTGAAGAAAAAAGATCAGTTATGGAGACCCCAAAGGGGATTGCCAGAGAGATCTGTCTCAGTTCTACGCGCTTGGATGTTTCAGAATTTCCTCCATCCGTATCCTAAAGATGCAGAGAAGCATTCATTGGCAGTAAAAAGTGGGTTGACAAGAAGCCAGGTATCGAATTGGTTTATCAATGCACGTGTTCGATTATGGAAGCCTATGATTGAAGAAATGTATGCTGAAATGAGTAGAAGAAAAGCTTGTAGAAATGAAGAAGGATTGGAGAGCAGTCACAGAAGCAGGATGAGCATGAACAGTCAAATGTTGAATATCAATTGA 1989 0.4173 MSGTAPKATTNVYCVLSLTLSLLIAITPSWPFSLHLSQTPFSSISNTRCNIYLFSLFVCYESSLLLFLLLPCSNFLFMFVAWSYFHFLQESKMENNMYSASLDIAGRNSAVIEEIAQHLAPKPLIQCYSFDLNNQNHIINGIPVLAAEQGEPRSDVHVDGCFVNQARIADSNSFVSIQGKSIVGDASNPINNSAIQEHLAGGRPIASDASLADRIGLQENLQSSAALPHSMSSLEALGPYIFSNWQDTSNPLAATFGDHAYDELSSIQKWNVNKFLKAPEANGTEIQAYSSIGNLVQNGWTSSNVASLGNFTYNSSNCSKELSLSLSRSPPTTGQCSEMSCSNASRSMNGTSSGLEQPSCSSKELCMRLGSNKHVQFSPAILGSRYLAGVQEIFAQIATYSFENVELMNYPASGVRGGGNKSASAFTPKRRVASNQNENSMYGAHAEESPSERHAADSNKSQLLMLLQLVDNGYSQCLDEVHTVASAFHAATELDPHMHAHFALQTISLLYKDLKERISNCIRAMGPDFNSLCSEEEKEWSLETSFIQKQWALQQLKKKDQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKHSLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMSRRKACRNEEGLESSHRSRMSMNSQMLNIN 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02845 662 CDD homeodomain 563 624 IPR001356 GO:0003677
Vimu1g02845 662 SMART HOX_1 563 627 IPR001356 GO:0003677
Vimu1g02845 662 SMART prehox3 375 520 IPR006563 -
Vimu1g02845 662 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 327 654 - -
Vimu1g02845 662 MobiDBLite consensus disorder prediction 640 662 - -
Vimu1g02845 662 Pfam Homeobox KN domain 580 619 IPR008422 GO:0003677|GO:0006355
Vimu1g02845 662 MobiDBLite consensus disorder prediction 418 457 - -
Vimu1g02845 662 MobiDBLite consensus disorder prediction 328 356 - -
Vimu1g02845 662 Pfam Associated with HOX 381 519 IPR006563 -
Vimu1g02845 662 ProSiteProfiles 'Homeobox' domain profile. 560 623 IPR001356 GO:0003677
Vimu1g02845 662 Gene3D - 566 645 - -
Vimu1g02845 662 SUPERFAMILY Homeodomain-like 565 632 IPR009057 -
Vimu1g02845 662 MobiDBLite consensus disorder prediction 427 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02845 Vimu-Chr1 40749297 40752576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02845 280 636 Homeobox Transcription Factor Family AT4G32980 49.311 2.02e-96 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vimu1g02845 POX 5.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02845 - - gmx:100812648 941.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02845 1 40749297 40752576 Vimu1g02845 1 40749297 40752576 ECH
Vimu1g02845 1 40749297 40752576 Vimu10g03161 10 42184146 42186290 PCT