Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02843 TTTCTCACACTTCTCAACTCTCGCTCTTCGCCACCGTCACTCTCCGCGGCCAACGGTCGCCGTCATCCGGACTCGCACCTCCACCTGCTAACGAGTGCCGGCGGAGCAATGTCGTTGAGAAGATCACCGTCTCCGTCCCCGTGCTGTGGCGACAGTCACTTCGTGCTGCTGGTGCCTGTCCTGTTCGTTATTCTCCACTCGCTCCTTTTGCTTCCTCATTCCTCGCTTGCTATTCGACCTATCGAGTCGGATCAGATCGAACTCGCCAACGCGACCGAGTCCAACGTCTCTCTCTCGCGACCTCGCGAAGGAAGCTTTGCCGACATAATTGATCGCGCGCTGGAGCACGAGTTCACCGAGAACGACCAGAACGAAGCGGCTGATCCGGGAAGTTTCAACAACAGTGTAGCAGAACAACAGGCTGTTCTGGAAACTGTGGCGCGAGTCACACCAAACAAGAATGACACAAAGGATGAAAAGTCATTTCAACTACATCATGTATTCAATAGAGGTGAGGATACCCCAATGTTGATAGATCGGAAGGACAATGTCTTTATCATTTCTAACTTTAAATCCAAGTATCCGGTGCTCCAGCTAGATTTACGATTGATTTCAGACCTGGTAGTTGCTATTGTTTCAGCAACTTGTGGGGGCGTTGCATTTGCTTTTGCTGGACAACCGGTGATAACCGGATATCTTCTAGCTGGCTCCATAGTTGGTCCTGGTGGCTTTAACTTCGTCAGTGAAATGGTGCAGGTGGAAACAGTGGCACAGTTTGGTGTAATATTTCTTCTTTTTGCATTGGGCCTCGAGTTCTCCACAACAAAGCTTCGAGTTGTTCGAGCTGTTGCTGTTCTTGGAGGTCTACTTCAGATTTTTCTATTTATGTGCATGTGTGGACTTACTGTATCGCTATGTGGTGGTAAAGCTTCAGAAGGGGTTTTTGTTGGTGCTTTCCTTTCCATGTCTTCAACAGCAGTGGTCTTGAAGTTTTTGATGGAAAAGAACACCACCAATGCTCTTCATGGACAAGTCACAATTGGGACCCTTATTTTACAGGATTGTGCTGTTGGATTGCTCTTTGCATTGCTTCCGGTTCTGGGTGGCACCTCAGGTGTTTTTCAAGGAGTGTTATCAATGACCAAGCTGTTGGTGACTTTGATTGCTTTCCTCTCTGTTCTGACTATATTGTCTCGCACTTGCCTTCCATGGTTACTTAAACTGATGATAAGCCTCTCATCACAGACAAATGAGCTCTATCAATTGGCATCTGTTGCATTCTGCTTGCTAGTAGCCTGGTGTAGCGATAAGCTGGGACTAAGTCTAGAATTAGGTTCCTTTGCCGCTGGAGTGATGATTGCAACCACTGATCTGGCTCAACATACACTAGAGCAAATTGAACCTATTCGCAATCTTTTTGCTGCTCTTTTCCTTGCCAGCATTGGAATGCTGATTCATGTTCATTTTCTCTGGAACCATGTTGATATTTTGGTAGCATCTGTAATATTGGTGATTGTTATAAAAACAATCATAATTGCATCTGTTGTGAAAGGATTTGGTTACAGCAACAAGACCTCAATACTTGTTGGAATGTCGATGGCACAGATAGGAGAATTTGCTTTTGTTCTTCTAAGTCGTGCTTCAAACCTCCATCTAGTTGAGGGTAAATTATATCTGCTGCTTCTTGGGACCACAGCTCTTAGTCTGGTAACAACTCCTCTACTTTTCAAGCTTATTCCTGCCGTAGTGCATCTTGGTGTGCTATTGAAGTGGTTCTCTCCTGACAGTTCAGTGGAGATAGGATATATTAAGGTAGATAGTCTCCGCTCAGACAGTGGTAAGCAGCGGGTAATTTTGATGGACCAAGAATCACATGACTCTTAA 1884 0.4565 FLTLLNSRSSPPSLSAANGRRHPDSHLHLLTSAGGAMSLRRSPSPSPCCGDSHFVLLVPVLFVILHSLLLLPHSSLAIRPIESDQIELANATESNVSLSRPREGSFADIIDRALEHEFTENDQNEAADPGSFNNSVAEQQAVLETVARVTPNKNDTKDEKSFQLHHVFNRGEDTPMLIDRKDNVFIISNFKSKYPVLQLDLRLISDLVVAIVSATCGGVAFAFAGQPVITGYLLAGSIVGPGGFNFVSEMVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGGLLQIFLFMCMCGLTVSLCGGKASEGVFVGAFLSMSSTAVVLKFLMEKNTTNALHGQVTIGTLILQDCAVGLLFALLPVLGGTSGVFQGVLSMTKLLVTLIAFLSVLTILSRTCLPWLLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMIATTDLAQHTLEQIEPIRNLFAALFLASIGMLIHVHFLWNHVDILVASVILVIVIKTIIIASVVKGFGYSNKTSILVGMSMAQIGEFAFVLLSRASNLHLVEGKLYLLLLGTTALSLVTTPLLFKLIPAVVHLGVLLKWFSPDSSVEIGYIKVDSLRSDSGKQRVILMDQESHDS 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02843 627 MobiDBLite consensus disorder prediction 1 23 - -
Vimu1g02843 627 Gene3D - 201 584 IPR038770 -
Vimu1g02843 627 Pfam Sodium/hydrogen exchanger family 208 577 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vimu1g02843 627 PANTHER POTASSIUM/PROTON ANTIPORTER-RELATED 61 619 IPR045158 GO:0015386|GO:0071805|GO:1902600
Vimu1g02843 627 MobiDBLite consensus disorder prediction 1 16 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02843 Vimu-Chr1 40720210 40734158 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02843 100 627 Antiporters AT5G11800 82.397 0.0 869
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02843 K26735 - gmx:100816510 1007.67