Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02836 ATGCCAAAGATGAAGCACCTTCTCAGAAAGCTTCACATCGGTGGTGGCGCTGCCACCATCAATCACAATCACAATCATAACGCATTGTCCTCGCACGAGCATCACGCTCCCTCCACTTCCGCGCTCTCTTCGCCCACCATAGTTTCGGATCCGACGCCGACTCGGAGCCCCGTTGTGGAGGCGCAGAACGACGTTGTGGAGTTCAACTTGTTGCAGGAGGAGGAGTTTCAGATGCAACTAGCGCTCGCAATCAGCGCTTCCGATTCCGATCGCCGTGACACTGCGGAATCTGCGCAGATCGACGCCGCAAAACAGATCAGCCTCGGTTACTCTGCTTCGTTTACTGATACTCATGCCCTAGTTCAGTTCCAATCGCTTCGTTATTGGAACTACAATGTGATTGGTTATGATGAGAAAGTGATGGATGGGTTTTATGATGTGTTTGGGGTTACCTCGAATTTGGTTGATCGAGGGAAAATGCCGTTGTTGGTGGATCTGCAGACGGCTCCTGTCTCTGGAGATGTCGATTGTGAGGTGATTTTGGTGAACCATGTTGTAGATCTTGAGCTTAATCAGCTTGAGAGGAAGGCGTGTAGTTTGGTTGAGGAGTGTTGTGTTTCTGAACTGGGGCTGATTTTGAGTGGCTTGCTTCAGAAGCTCGCGGATGTTGTTGTTAATAGAATGGGTGGACCTGTTACTAATGCTGAGAAACTTACTAAGAGTTGGGCTATGAGGAGTCGTGAGTTACGGGATTCTATGCAAACCATTGTTCTTCCCCTTGGCTGTCTTGATGTTGGACTTTCACGTCACCGAGCCCTACTTTTTAAGGTACTTGCTGATAGGATCAACATTCCCTGCATGCTGGTAAAAGGGAGCTATTATACAGGAACTGATGATGGGGCTGTGAATTTGATTAAAGCTGATGATGGAAGTGAGTACATCATTGATATGATGGGTGCTCCTGGAACTCTTATTCCTGCTGAGGTACCCAGCAGCCAGCTCGAAAGCACCAGTTTTTCTGTTAGGGGTTGTGCAGAGATTGTTGGACTACCAGAGAACACAGGTTCAATGGTAGATGATAGAACTGGTGCGCCAGGAGTCTTTTCTGATTGTGGTAGAATTTCAACAGGGGGGAGAGGCCGGACAGAAGAATTATTAGTTATGGGCAGTCAAACAGAGCCTGATGAAATTAATAATGTTAAAGTAAATGAGACAAGGAGATTTGAACATACAGAAGCATACGAATGTTCATCACATACAGAACCATCACCTGCAGAGAATATGCATGTAAAAAATGTCTCTAAGTATGTTCTCAGTGCAGCAAAGGACCCAGAATTTGCCCAAAAGTTACATAATGTTCTACTAGAGAGTGGTGCCTTACCTCCTCCCGATCTTTTTTCAAATATAAATTCCCAAGATAGGGGTGTAGATAAAGTTAATGAAGAAAATGTTGATTCTGTTCAAGATGACACAAATAGATTATTATTATTAAGGTATGAAAAATCTCACATACCCTCACATGGGTTGGGCTCTGCCAGTGATACTAGGTTATGTCAATCAGCTGACTGCTTAGCTGAACAACAAAAAGAATTGCACACAGATGTTGAATTTTGCAATTCTTCACAGAGTGATAATACAAGGAACGGGTTTTTACATGCTTCTGATAGGGATATTGATGTAGAGAAATCTAACGCAATGAATGTTGTTTTGGCTTCCATACACTCACATAATAAGATATGTAAAGAAAAGTGTACTGGATCTTCCTTGCCCAAGGCAGCTCTTTCCTGTAAAGTGCATAATGGGATTGGTTGTTTCTGTGAAGATGATGAAAATGGCTATGGAAAGAATGTAGGAGTTTCTTTTAGAGGGTTGGGCAAAGATTCAGCTGTTCAAAGAAATGAGATGGAGGTTAATGGAGAATGTTATGATGGTAGAAACAAGGAAGTTAACCAAGTGCTTGGTGAAGGCTCAGAATGGGAAATTCAATGGGAGGATCTTGATATTGGTGAGCGTATTGGAATTGACCTAGTAGTACAAGCTGATTGGAATAATGCTCATCTTAGATGTATTCTAACCCTGTTCACTCATGCCCTTGTAGGTTCGTATGGTGAAGTTTATCGTGCTGATTGCAATGGCACTGAAGTTGCCGTAAAGAAGTTTCTGGACCAAGATTTCTCTGGTGATGCACTAGCTCAGTTCAAATCTGAAGTTGAGATCATGCTAAGGCTGCGACATCCTAACGTTGTGCTCTTCATGGGAGCAATTACTAGGCCCCCACATTTCTCGATCTTGACCGAATTTCTTCCAAGAGGCAGTTTATATAGGCTACTGCATCGTCCCAATATTCGGCTTGATGAGAAGAAAAGGTTGCGCATGGCTCTAGATGTGGCTAAGGGAATGAATTACTTGCACACGAGCCATCCTCCCATTGTACACCGAGATTTGAAGTCTCCAAATCTTCTTGTTGACAGGCATTGGATTGTTAAGGTTTGTGATTTTGGTCTGTCAAGAATGAAGCACCATACATTTTTGTCATCAAAATCTTGTGCTGGAACGCCTGAGTGGATGGCACCGGAAGTCTTAAGAAATGAGCCAGCCAATGAGAAGTGTGATGTGTATAGTTTTGGTGTGATCTTGTGGGAGTTGATTACTACAAGAATTCCCTGGAAAGGTTTGAACCCAATGCAGGTTGTTGGAGCTGTTGGATTCCAAAACAAACGTCTTGAAATTCCAGAAGATGTCAATCCAGTAGTAGCACAGATTATACGTGATTGCTGGCAAACGGAGCCACACTTGCGGCCATCTTTCTCACAGCTGATGTCTCGTCTTTACCGTGTTCAACATATGGTTGCCCCAAAAACGGGTTCAACACATTAA 2877 0.4362 MPKMKHLLRKLHIGGGAATINHNHNHNALSSHEHHAPSTSALSSPTIVSDPTPTRSPVVEAQNDVVEFNLLQEEEFQMQLALAISASDSDRRDTAESAQIDAAKQISLGYSASFTDTHALVQFQSLRYWNYNVIGYDEKVMDGFYDVFGVTSNLVDRGKMPLLVDLQTAPVSGDVDCEVILVNHVVDLELNQLERKACSLVEECCVSELGLILSGLLQKLADVVVNRMGGPVTNAEKLTKSWAMRSRELRDSMQTIVLPLGCLDVGLSRHRALLFKVLADRINIPCMLVKGSYYTGTDDGAVNLIKADDGSEYIIDMMGAPGTLIPAEVPSSQLESTSFSVRGCAEIVGLPENTGSMVDDRTGAPGVFSDCGRISTGGRGRTEELLVMGSQTEPDEINNVKVNETRRFEHTEAYECSSHTEPSPAENMHVKNVSKYVLSAAKDPEFAQKLHNVLLESGALPPPDLFSNINSQDRGVDKVNEENVDSVQDDTNRLLLLRYEKSHIPSHGLGSASDTRLCQSADCLAEQQKELHTDVEFCNSSQSDNTRNGFLHASDRDIDVEKSNAMNVVLASIHSHNKICKEKCTGSSLPKAALSCKVHNGIGCFCEDDENGYGKNVGVSFRGLGKDSAVQRNEMEVNGECYDGRNKEVNQVLGEGSEWEIQWEDLDIGERIGIDLVVQADWNNAHLRCILTLFTHALVGSYGEVYRADCNGTEVAVKKFLDQDFSGDALAQFKSEVEIMLRLRHPNVVLFMGAITRPPHFSILTEFLPRGSLYRLLHRPNIRLDEKKRLRMALDVAKGMNYLHTSHPPIVHRDLKSPNLLVDRHWIVKVCDFGLSRMKHHTFLSSKSCAGTPEWMAPEVLRNEPANEKCDVYSFGVILWELITTRIPWKGLNPMQVVGAVGFQNKRLEIPEDVNPVVAQIIRDCWQTEPHLRPSFSQLMSRLYRVQHMVAPKTGSTH 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02836 958 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 152 946 - -
Vimu1g02836 958 ProSitePatterns Serine/Threonine protein kinases active-site signature. 810 822 IPR008271 GO:0004672|GO:0006468
Vimu1g02836 958 ProSiteProfiles Protein kinase domain profile. 691 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02836 958 Pfam Protein tyrosine and serine/threonine kinase 700 943 IPR001245 GO:0004672|GO:0006468
Vimu1g02836 958 Gene3D Phosphorylase Kinase; domain 1 691 768 - -
Vimu1g02836 958 FunFam Serine/threonine-protein kinase isoform 1 657 769 - -
Vimu1g02836 958 CDD STKc_MAP3K-like 700 943 - -
Vimu1g02836 958 Pfam Ethylene-responsive protein kinase Le-CTR1 122 325 - -
Vimu1g02836 958 SUPERFAMILY Protein kinase-like (PK-like) 700 949 IPR011009 -
Vimu1g02836 958 FunFam Serine/threonine-protein kinase CTR1 770 953 - -
Vimu1g02836 958 MobiDBLite consensus disorder prediction 21 56 - -
Vimu1g02836 958 SMART serkin_6 691 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02836 958 PRINTS Tyrosine kinase catalytic domain signature 804 822 IPR001245 GO:0004672|GO:0006468
Vimu1g02836 958 PRINTS Tyrosine kinase catalytic domain signature 914 936 IPR001245 GO:0004672|GO:0006468
Vimu1g02836 958 PRINTS Tyrosine kinase catalytic domain signature 765 778 IPR001245 GO:0004672|GO:0006468
Vimu1g02836 958 PRINTS Tyrosine kinase catalytic domain signature 851 861 IPR001245 GO:0004672|GO:0006468
Vimu1g02836 958 PRINTS Tyrosine kinase catalytic domain signature 870 892 IPR001245 GO:0004672|GO:0006468
Vimu1g02836 958 Gene3D Transferase(Phosphotransferase) domain 1 770 954 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02836 Vimu-Chr1 40661918 40671392 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02836 625 949 MAP Kinase Kinase Kinase AT5G11850 73.476 1.63e-167 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vimu1g02836 PK_Tyr_Ser-Thr 1.6e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02836 K04424 - gmx:100779137 1577.76