Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02832 ATGATAACTCTCTTTCTCATTCATTGTTTCATTCCCCATTTCTCACTTCTTCTTCTTCTTCCTTCCCTATCCCTCTGTCCATTACTTTTGCATACTTCACATCACACTTTTCTCTCTCTCTTTCTCTCCATATCCATGACTCCTTATTCCCTCCATTCACCATCTCCTTCCTTACAACCTCAAACCCAAATCTTCATTTCTTCTAATAATCAGGATTGCCCTACCTTCTTCAACATCTTTGATCCAAGGAAAACCATAGAAATTGGAGCCTTCACACAAACTTATCAACAGGATGAGAAGATGGTATTGCATGATGGATCATCAAGCAATAATCTGAATTCACCTGAGCCAGTTACGGTTGATCCAATGAGCAGCAGAAATGAGGGTAATTTAGGGTCGTACAAAATGGAGGAAGAAGACATAAAACACAGTCATGGGTCTGGGAAATGGATGTCTTCAAAGATGAGGTTAATGAAAAAGATGATGAGAAGGAGCATGAGTCCAACCTCTGACAGATTGAATCCACAAGGGCAAGAAATCAGATACAGCCAAAGAAGCCCTCGCAACACCAGCAGTAGCACCACTAGGGTTTGTTCGGACTGTAACACAAGCACTACCCCACTTTGGAGGAGTGGCCCTAAGGGTCCTAAGTCTCTTTGCAATGCCTGTGGAATTAGACAGAGGAAGGCAAGAAGGGCAATGGCTGAAGCTTCCAATGGTTTGGTCACTCCCATAAACTCAGTATGTGCAAAGACCAGAGTGTACAACAAGGAGAAAAAGTCTCGTGGAAACCATTTTGCACAGTTCAAGAACAAGTACAAGTCCAGTACTACTACTACTACTAGTGCTTCTGCAGGCTCATCTGAGGGGCTGAGAAAGATTGAATATTTCAAGGATTTTGCCATAAGTTTGAGCAGTAAAAACTCATCTTTCCAACAAAAAGTGTTTCCACGGGATGAAGTAGCTGAGGCAGCAATGCTTCTGATGGAGTTATCCTGTGGTTTTGTCCACTGA 1014 0.425 MITLFLIHCFIPHFSLLLLLPSLSLCPLLLHTSHHTFLSLFLSISMTPYSLHSPSPSLQPQTQIFISSNNQDCPTFFNIFDPRKTIEIGAFTQTYQQDEKMVLHDGSSSNNLNSPEPVTVDPMSSRNEGNLGSYKMEEEDIKHSHGSGKWMSSKMRLMKKMMRRSMSPTSDRLNPQGQEIRYSQRSPRNTSSSTTRVCSDCNTSTTPLWRSGPKGPKSLCNACGIRQRKARRAMAEASNGLVTPINSVCAKTRVYNKEKKSRGNHFAQFKNKYKSSTTTTTSASAGSSEGLRKIEYFKDFAISLSSKNSSFQQKVFPRDEVAEAAMLLMELSCGFVH 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02832 337 MobiDBLite consensus disorder prediction 167 211 - -
Vimu1g02832 337 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 192 232 - -
Vimu1g02832 337 MobiDBLite consensus disorder prediction 105 131 - -
Vimu1g02832 337 MobiDBLite consensus disorder prediction 164 215 - -
Vimu1g02832 337 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 46 337 - -
Vimu1g02832 337 ProSiteProfiles GATA-type zinc finger domain profile. 192 228 IPR000679 GO:0006355|GO:0043565
Vimu1g02832 337 SMART GATA_3 192 243 IPR000679 GO:0006355|GO:0043565
Vimu1g02832 337 ProSitePatterns GATA-type zinc finger domain. 198 223 IPR000679 GO:0006355|GO:0043565
Vimu1g02832 337 CDD ZnF_GATA 197 234 IPR000679 GO:0006355|GO:0043565
Vimu1g02832 337 Gene3D - 191 238 IPR013088 GO:0006355|GO:0008270
Vimu1g02832 337 Pfam GATA zinc finger 198 231 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02832 Vimu-Chr1 40619506 40621359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02832 149 337 C2C2-Gata Transcription Factor Family AT4G26150 39.450 2.68e-28 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vimu1g02832 GATA 3.2e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02832 - - vra:106764137 575.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02832 1 40619506 40621359 Vimu10g03154 10 42154801 42161335 PCT