Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02830 GATCTCTTCTCCCTCCCGCGCCTCCAGCACGTCATCTCAGCGGTTGTAATTCGGCTATTTGTTTGTGTTGTTTTTCTTGAAGCAGAATCGGTTTTGCAGTCTCTAGGCGAGTCGGTTACGAGTTCCAGTTGCAAAAGCACGGAGTTGGAGCAATGTCGCGACGAGTCAGCGGCGTTGGTGCTGAAATTTGTGGCGATGGCATCGATTTTGTTGGCCGGATTTGGAGGGGTCGCGATTCCGCTGGCGGGGAAGTCGCGGCGGTTTCTTCGGCCGGATGGGGATGCCTTCACGGCGGCGAGGGCGTTCGCGGCGGGGGTGATTCTCGCCACGGGGTTTGTGCACATGCTGAGGGATTCGTGGGAGGCGCTAGGAGACCCGTGTCTGAGAACGTACTGGAGCGCGTGGGCGAAGTTTCCTTTCACCGGTTTCTTCGCCATGGTTTCCGCGCTCTGCACTCTCCTCGTTGACTTTATGGCGACTGCGTACTATGAGCGGAAGGAGGGGCGTGGATGCGTGGAGCGTGCGAAGGTTGCTGAGTGTGGGAGTGACGAAGAGGCGTTGTTGGAAACGGGTATAGTGGAGGTTAAGGATGTTGGGGGAGAGGGAAGTCACGCGGTGCAGCGAACACACTCCCACTCGCATCACCGCGATGATGTGGAAAGTACGGTCCGGCACGTCGTGGTCTCACAGGTATTGGAGCTTGGGATTGTATCTCATTCGATGATAATTGGGCTATCTCTAGGAGTTTCGCAAAGCCCTTGTACCATGAGACCTCTAATTGTAGCATTATCGTTCCATCAGTTCTTCGAAGGATTTGCACTTGGTGGATGCATCGCCCAAGCCCAATTCAAGACCTTGTCAGCAACAATTATGTCATGTTTTTTTGCACTAACAACGCCCCTAGGTGTTGCCATTGGGGCTGGTATTGCTTCAGTTTTTAACCCTTACAGTCCAGGAGCACTCATCACTGAAGGCATCTTGGACTCTTTCTCAGCTGGGATTTTAATGTACATGGCTTTAGTGGACTTAATAGCCGCAGAATTTCTTAGCAAGAAAATGCATTGCAACTTCAGGCTTCAGATTACATGTTACTGCTTGCTTTTCCTTGGAGCTAGCTTGATGTCTTCACTCGCAATTTGGGCATGA 1146 0.5227 DLFSLPRLQHVISAVVIRLFVCVVFLEAESVLQSLGESVTSSSCKSTELEQCRDESAALVLKFVAMASILLAGFGGVAIPLAGKSRRFLRPDGDAFTAARAFAAGVILATGFVHMLRDSWEALGDPCLRTYWSAWAKFPFTGFFAMVSALCTLLVDFMATAYYERKEGRGCVERAKVAECGSDEEALLETGIVEVKDVGGEGSHAVQRTHSHSHHRDDVESTVRHVVVSQVLELGIVSHSMIIGLSLGVSQSPCTMRPLIVALSFHQFFEGFALGGCIAQAQFKTLSATIMSCFFALTTPLGVAIGAGIASVFNPYSPGALITEGILDSFSAGILMYMALVDLIAAEFLSKKMHCNFRLQITCYCLLFLGASLMSSLAIWA 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02830 381 PANTHER ZINC/IRON TRANSPORTER 58 374 - -
Vimu1g02830 381 NCBIfam ZIP zinc/iron transport family 44 381 IPR004698 GO:0005385|GO:0016020|GO:0071577
Vimu1g02830 381 Pfam ZIP Zinc transporter 61 378 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02830 Vimu-Chr1 40597500 40601533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02830 35 381 Inorganic Solute Cotransporters AT1G10970 61.111 7.70e-150 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02830 K14709 - gmx:100809426 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02830 1 40597500 40601533 Vimu10g03152 10 42141503 42142747 PCT