Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02815 ATGTCTAATTTGACTTCTGCATCGAGTGAAATAAGTGCTTCTTCAGGAATCAGAAATGACAGTGGTTTTTTCCATGCTCACCAATACTCCTCTACTTCAATAAATCAAGAACCACAACCAAAAAAGAAGAGAAGTCTTCCAGGCCATCCAGACCCTGATGCAGAAGTGATAGCATTGACTCCAGAGACCCTATTGGCAACAAACAGGTTTGTGTGTGAGATTTGTCAGAAAGGGTTTCAAAGGGATCAGAATCTGCAGCTTCATAGAAGAGGGCACAATCTGCCATGGAAGCTAAAGAAGAAGAACAGCAAAGAGGTGAGAAAGAAAGTGTATGTTTGTCCAGAGGCAACATGTGTTCACCATGACCCTTCAAGGGCCCTTGGGGACCTCACTGGAATCAAGAAGCACTTTTTCAGGAAGCATGGAGAGAAGAAATGGAAGTGTGAGAAGTGCTCCAAACGCTATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAAATCTGTGGCACCAGGGAATACAAATGTGACTGTGGTACCCTTTTCTCTAGAAGAGACAGCTTTATCACTCACAGAGCCTTCTGTGATGCCTTAGCACAAGAAAGTGGAAGAGCAGTGAACCCTCACTCTCTATTATCATCTCAGTCCCAATTTCGAAGCCATGGGCTTCAACTTGAAGCAGCAGCATCAATGGTGATGAAAAGAGAACAAGATTTCAACCTATTAGGTCAAGAAATTCCATCATGGTTATCTTCTCCAACAGTGTTGGAAGAATCAATGCACAGTCAAACACTGAGAACCACCTTAGACTTCTCAACAACACAGTTGTTTCCCACACATGCGAACCACTCATTGTTCCACCATGATCATCATCAAAACCCTAGCCCTACTACTACTACTACTACTTCTACAACAACAGCTTCAACACCCACTTTTCTTCCTTCTTTGAGTTCCTTCCATTATTCCACAACTTCTCCTCACATGTCAGCCACTGCTTTGTTGCAAAAAGCCTCACAAATTGGCGTAACAGTGAGTGCAGCACCTTCACAAGCGATGATAGTGAGACCCCACTTGTTTCTGCAGCAGGTTCACGTGCCTGAATGTACAACAACAACTACTACTACAACAGGGTATAATAATATGGCTTCATCTTCACCCGTTTCTGGAATGGTTATGGCTATACCTTCACGGAATAAAGCTGCAATGCTCTCTGATTACTTGGAAGAAGGTGCTGCTGCCAAGTTGCAGAAGCTAGCTAGTGCTGAATAA 1266 0.4344 MSNLTSASSEISASSGIRNDSGFFHAHQYSSTSINQEPQPKKKRSLPGHPDPDAEVIALTPETLLATNRFVCEICQKGFQRDQNLQLHRRGHNLPWKLKKKNSKEVRKKVYVCPEATCVHHDPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAQESGRAVNPHSLLSSQSQFRSHGLQLEAAASMVMKREQDFNLLGQEIPSWLSSPTVLEESMHSQTLRTTLDFSTTQLFPTHANHSLFHHDHHQNPSPTTTTTTSTTTASTPTFLPSLSSFHYSTTSPHMSATALLQKASQIGVTVSAAPSQAMIVRPHLFLQQVHVPECTTTTTTTTGYNNMASSSPVSGMVMAIPSRNKAAMLSDYLEEGAAAKLQKLASAE 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02815 421 FunFam protein indeterminate-domain 12-like 49 117 - -
Vimu1g02815 421 SUPERFAMILY beta-beta-alpha zinc fingers 69 166 IPR036236 -
Vimu1g02815 421 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Vimu1g02815 421 MobiDBLite consensus disorder prediction 30 54 - -
Vimu1g02815 421 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 27 366 IPR031140 -
Vimu1g02815 421 MobiDBLite consensus disorder prediction 284 308 - -
Vimu1g02815 421 Gene3D Classic Zinc Finger 70 116 - -
Vimu1g02815 421 MobiDBLite consensus disorder prediction 290 308 - -
Vimu1g02815 421 SMART c2h2final6 70 92 IPR013087 -
Vimu1g02815 421 SMART c2h2final6 111 141 IPR013087 -
Vimu1g02815 421 SMART c2h2final6 146 166 IPR013087 -
Vimu1g02815 421 FunFam protein indeterminate-domain 5, chloroplastic-like 124 203 - -
Vimu1g02815 421 Gene3D Classic Zinc Finger 124 202 - -
Vimu1g02815 421 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02815 Vimu-Chr1 40466555 40469694 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02815 31 346 IDZ Gene Family AT3G50700 54.192 7.87e-116 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu1g02815 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02815 K25870 - gmx:100783557 550.436