Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02810 ATGGAGGGAATTGTGGTGAAGGAGGAAGAAACAGTGGCAGGTGGTGGTGGTGGTGGTTCATCATCTTCTTCTTTGAGCTTTACTCCACAACCAATGGAAGGGTTGAACGAAGTGGGTACCCCACCCTTTTTGACAAAGATCTATGACATGGTCGAAGATCATTCCACAGATTCTGTTGTGTCTTGGAGCACTTCTTGCAATAGCTTTGTTGTGTGGGATTCTCACAAGTTTTCTACTAACATTCTTCCTCGTTACTTCAAGCACAACAATTTCTCCAGCTTCATTCGCCAGCTCAACACCTATGTAAGTAGTAAGTACTATGATGGCTTTAGGAAAGTTGATCCTGATAGATGGGAGTTTGCAAATGAAGGATTTTTAGCAGGACAGAGGCACTTATTGAAGAACATAAAGAGAAGAAGAAGAGTGTCACAGAGCATGCAAGAAAGAGGAGTAGGAGGAGCATGTGTTGAAGTGGGGGAGTTTGGACTAGAAGGTGAGTTGGAGAGGTTGAAAAGAGATAGGAACATTCTGATGGCAGAAATTGTGAGGTTGAGGCACCAACAGCTTAACTCAAGAGACCAATTGAGTGCCATGGAAACCAGATTGCAAGCCATAGAGAAGAAGCAACAAAAGATGACCATATTCCTTGCCAAAGCACTAAAAAATCCATCTTTCATGCAACAATTAGCCCACAAGACCTCCCAAAGTAGAGAAATCTTGGATGCTGAAATCAATAGGAAAAGGAGACTAATTGCTGCCCAGAGTTTCGAGAACCTGCAACAAGATGATCCTGTAACATTGATGGACTATTCAAATCAACAAGATTTGGCAACTATGGAGCCTGATATGAACACTTTTTTCTCACCAGCTTTTGATAGTGAACTTGATCATGAAATCAAAGAGTCTGCACTAGATTCTGATATAGCAGCTAGTCAGAGTTATTTTGGAGACACAATATTGGAGGACTTGCTCATTGAAGACTTGGTCACTGGGGATCCAAAGGATGAAGTTATCATTGGTGATTGTTCCCAGATTGATGTTCCAGTGGAGGATTTGGTAGCAGACCCTGATGATTGGAATCATATGGACCATTCAGGATCAAAACCATAG 1110 0.4198 MEGIVVKEEETVAGGGGGGSSSSSLSFTPQPMEGLNEVGTPPFLTKIYDMVEDHSTDSVVSWSTSCNSFVVWDSHKFSTNILPRYFKHNNFSSFIRQLNTYVSSKYYDGFRKVDPDRWEFANEGFLAGQRHLLKNIKRRRRVSQSMQERGVGGACVEVGEFGLEGELERLKRDRNILMAEIVRLRHQQLNSRDQLSAMETRLQAIEKKQQKMTIFLAKALKNPSFMQQLAHKTSQSREILDAEINRKRRLIAAQSFENLQQDDPVTLMDYSNQQDLATMEPDMNTFFSPAFDSELDHEIKESALDSDIAASQSYFGDTILEDLLIEDLVTGDPKDEVIIGDCSQIDVPVEDLVADPDDWNHMDHSGSKP 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02810 369 Gene3D - 36 140 IPR036388 -
Vimu1g02810 369 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu1g02810 369 PRINTS Heat shock factor (HSF) domain signature 43 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu1g02810 369 PRINTS Heat shock factor (HSF) domain signature 94 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu1g02810 369 Pfam HSF-type DNA-binding 43 139 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu1g02810 369 SUPERFAMILY "Winged helix" DNA-binding domain 40 139 IPR036390 -
Vimu1g02810 369 MobiDBLite consensus disorder prediction 1 29 - -
Vimu1g02810 369 FunFam Heat shock transcription factor 1 36 140 - -
Vimu1g02810 369 Coils Coil 167 187 - -
Vimu1g02810 369 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 29 280 IPR027725 -
Vimu1g02810 369 SMART hsfneu3 39 139 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02810 Vimu-Chr1 40407944 40410218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02810 29 363 HSF AT2G26150 50.000 1.86e-111 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vimu1g02810 HSF_DNA-bind 5.7e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02810 K09419 - gmx:100778558 468.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02810 1 40407944 40410218 Vimu10g03144 10 42088026 42089375 PCT