Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02808 ATGGGTGCATCTGGAAAATGGGTGAAGGCGTTGATCGGACTCAACAGCAAGAATGAACTTGGAGGGAAGAAGAAGAAGTGGAGGCTGTGGAAGAGTTCTTCTGCAGGGGAGAATAGATCTCAAGACTTCGAGTATTGCAGTGTGGCTTCGGATTCCTTCACCGCTGCAGTGGCCACAGTTGTCAGAGCTCCACCTAAGGATTTCAAACTCCTCAAGCAAGAATGGGCTGCCACCCGAGTTCAAACTGCTTTCCGTGCCTTCTTGGCAAGAAGGGCATTGAGGGCGTTGAAGGGAGTGGTGAGGCTTCAAGCTCTTGTAAGGGGTAGACTTGTAAGGAAGCAGGCTGCAGTCACACTGAGGTGCATGCAGGCCTTGGTTCGTGTCCAGGCACGTGTGAGGGCGCGGCGCGTCCGAATGTCCATGGAGGGGCAAGCAGTGCAAAACATGCTAAATGAACGCCGCACCAAAGCTGAACTCAACAAGGAAGCAGAGGATGGTTGGTGTGATAGCAAAGGATCATTGGAAGATGTGAAGACAAAACTACAAATGAGGCAAGAGGGAGCTTTCAAGAGGGAGAGAGCAATTGCATACTCTCTTGCCCAAAAGCAATGGAGATCAACCCCCATTTCAAATTCAAGAGCAAACACCTCTTTGAACAAGCAAGAGATAGACAGGGCTAACTGGGGATGGAGTTGGTTAGAACGTTGGATGGCAGCAAAGCCATGGGAGAGTAGATTGATGGAACAAACTCGTCATCATGCTGATGCCACAGAGAAAACTCCTCCTCCTCCTCCAAAGAAATGCGTGGAGCCCACAAATTCAAAAAATATTTCAGAACCATGCAGTGTCAAAGTCAGAAAGAACAATGTCACCACAAGGATTTCAGCTAGACCTCCTCATGTTGGCCAAGCCACTCGTTTGTCCTCTAGTCCTAGTTCTGAGTTTCACTACGATGAGAGCTCTAATTCATCTTCAATATGCACATCCATGACACCAATATCTGGGAGTGTTTCTTTGCCTTGTGAGAGGACAGAGGATAGTAACAACAGTACTACCAGGCCTAGTTACATGAACCTGACCGAGTCAACCAAGGCAAAGCAGAAAACCAGCAGTCATCAATACAACAGATCCCAGAGGCAACAGTCCATGGATGAGTTCCAGTTTCTCAGAAGGACAGCGGTTTTCTCAAATGGAGATGCCAAAAGCACTGGTGCTTCTGACCCTTCAACCAACTTTTCTAGGCCACTTTACCTACCCAACTACATGGATAAGAAGCCACGGTGA 1284 0.4821 MGASGKWVKALIGLNSKNELGGKKKKWRLWKSSSAGENRSQDFEYCSVASDSFTAAVATVVRAPPKDFKLLKQEWAATRVQTAFRAFLARRALRALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSMEGQAVQNMLNERRTKAELNKEAEDGWCDSKGSLEDVKTKLQMRQEGAFKRERAIAYSLAQKQWRSTPISNSRANTSLNKQEIDRANWGWSWLERWMAAKPWESRLMEQTRHHADATEKTPPPPPKKCVEPTNSKNISEPCSVKVRKNNVTTRISARPPHVGQATRLSSSPSSEFHYDESSNSSSICTSMTPISGSVSLPCERTEDSNNSTTRPSYMNLTESTKAKQKTSSHQYNRSQRQQSMDEFQFLRRTAVFSNGDAKSTGASDPSTNFSRPLYLPNYMDKKPR 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02808 427 PANTHER IQ-DOMAIN 5-RELATED 1 390 - -
Vimu1g02808 427 MobiDBLite consensus disorder prediction 249 384 - -
Vimu1g02808 427 MobiDBLite consensus disorder prediction 271 384 - -
Vimu1g02808 427 MobiDBLite consensus disorder prediction 397 416 - -
Vimu1g02808 427 ProSiteProfiles IQ motif profile. 73 101 IPR000048 GO:0005515
Vimu1g02808 427 MobiDBLite consensus disorder prediction 397 427 - -
Vimu1g02808 427 ProSiteProfiles IQ motif profile. 97 124 IPR000048 GO:0005515
Vimu1g02808 427 Pfam Protein of unknown function (DUF4005) 322 404 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02808 Vimu-Chr1 40389865 40392128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02808 1 427 IQD Protein Family AT2G26180 58.239 9.17e-141 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02808 - - gmx:100787102 676.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02808 1 40389865 40392128 Vimu10g03141 10 42071899 42075402 PCT