Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02799 ATGTGTTTCGCAGATATTGTTCACCAACAAAGCAGGGATGTACAATTGGGTAGGACCAAAGTATTTCTCAGAGCTGGGCAAATTGGTATTTTAGACCAGAGACGTGCTGAAGTTTTAGACAATGCTGCAAAGTGTATCCAGCGCCGCATGAGGACATTTATTACACATCAGGATTTTATAATTTTAAAATCTGCTGCGATTTCTCTTCAGGCAGGCTGCAGGGGTCAGTTCATCTTTCCTTATGCAGTTAAAACTGGCAAGGTTGCATATATCTACCCTCCTAAATCCTGCGAGGTTGGATGGGAGTGCACCTGGCAACAATTTTACTATGAGATGCTCCCGATCTTTGGAGCTCTGCTTCCGCATTTCTTCTTTATTGTCTTAGCTATGATTCTTTTTAGGGTTGCCTCAAGTGCACCCATTTCCTTTGACTCTTGGGATTGCTTGAAGTGCACAAAACTTGTGGGTTTGTCACTGGTGCCCAAGCGGCTCCAGTTTGTCGGATCCATAGTCCTTGCTGGAGTAGTCGTCGATCTTTTCGTCTTACTTATATGTTTTATCCAGGAGGGGTGGTTAAGGAATTCCTATACTTTGACCAATAGACACTCTCTTGTAATGTTGCTACTTGATCAAGGAGTGCGCTTAACACATCTTGGGAGATATAGAATGCTAGTTGGAAAACTCAATTATCTTATTGTCATTGGTCCAAATATTGCTTTTGCATTTAGCATGGTGCACTGTGATGCAACTATTTGGATTCTTAAGTATCTTAAGCGATTCTCTCACAAAGGTCACACTGCCCGAAAGATATATGCTGCTAAAAGGGAGACAGCAGCGGCTATCTCCATCCAGAAATATATTCGGATGTGGCTTACTAGGCATGCTCACTTAAAACTGTATTTTTCTGCAATTATCATTCAATCTCATGTTCGAGGTTTTGTGACTCGCCAGAGATTCTTGCATGCAAAAGAACATAGCGCTGCTACTTTTGTTCAGGCCTATTGGAGGATGTCCAAGGTTAGGTCATCTTTCCTACGATATCAAACTTCAATTGTGGCAATACAATGCCTTTGGCGGTGCAGACAAGCAAAAAGAGAGTTACGGAGACTTAAACAAGAGGCAAATGAAGCTGGTGCTCTTCGATTAGCCAAGAATAAACTGGAGAAGCAAATGGAAGATCTCACATGGCGTTTGCATCTTGAAAAGAAAATACGGGTTTCCAATGAAGAGGCTAAAAAAATAGAGATTTCCAAACTTCAAAAGATGTTAGATGCTTTGAATCTTGAATTGGATGCTGCTAAATTGGCAAAAATTAACGAGTGCAACAAGAATGCTGTTCTGCAAAATCAATTAGAATTATCAGTAAAGGAAAAGTCTGCCTTGAAACGGGAGCTAGTAGCGGTGGATGAATTGCGAAAGGAAAATGCTTTATTAAAGGTTTCATTGGATGCATTTGAAAGGAAGTACAAGACCTTAGAGCTTGAGCTTATGGATGCTCAAAAAGGCCGGGATGAAACCATGGAGAAACTGAGGGAGTTTGAACAGAAGTGTTCTCAACTCGAGCAAAATGAAAAAACGCTTGAGGAAAAGTTAAAGAGTTTAGAGAATGAAAATCATGTGCTTCGTCAGAAAGCATTAAGTACCCCTTTTAAGAGTAGCCGTTCAGGTTTTGCCAAGTCAGTGTCAGAAAAATTCTCAACTGCAATTACCTCTCACACTGATCGAAAGACCATATTTGAGTCACCCACGCCCACAAAACTTATTGCCCCTTTAACAGTAGGCTTGTCAGACTCTCGTCGATCTAAGTTAACAGCAGAGAAGCACCAGGATAACTATGAATTCCTCTCCAAGTGTATAAAAGAAAATTTGGGATTTAAAAATGGTAAACCTATTGCTGCTCGTATTATATATAAATGTCTGCTTCATTGGCATTCATTTGAAAATGAGCGCACAGCGATTTTTGATTCCATCATCGAAGGTATAAATGAGGTTCTAAAGGTTAGGGAGGATGACATTATCCTGCCATATTGGCTGTCCAATACCTCTGCGCTTCTATGCCTTTTACAGAGGAACTTACGGTCAAATGGTTTTTTAACTGCCACTGCTCAGCGTTATCCTGGATCATCTGGTTTAACCAGCCGGACAGGACATTTTAAGTTGCATTTCGTTTTGACTAAATTGTGGGCTGCAGTGGATGAAAATGGTATAGAAAGATAG 2217 0.4069 MCFADIVHQQSRDVQLGRTKVFLRAGQIGILDQRRAEVLDNAAKCIQRRMRTFITHQDFIILKSAAISLQAGCRGQFIFPYAVKTGKVAYIYPPKSCEVGWECTWQQFYYEMLPIFGALLPHFFFIVLAMILFRVASSAPISFDSWDCLKCTKLVGLSLVPKRLQFVGSIVLAGVVVDLFVLLICFIQEGWLRNSYTLTNRHSLVMLLLDQGVRLTHLGRYRMLVGKLNYLIVIGPNIAFAFSMVHCDATIWILKYLKRFSHKGHTARKIYAAKRETAAAISIQKYIRMWLTRHAHLKLYFSAIIIQSHVRGFVTRQRFLHAKEHSAATFVQAYWRMSKVRSSFLRYQTSIVAIQCLWRCRQAKRELRRLKQEANEAGALRLAKNKLEKQMEDLTWRLHLEKKIRVSNEEAKKIEISKLQKMLDALNLELDAAKLAKINECNKNAVLQNQLELSVKEKSALKRELVAVDELRKENALLKVSLDAFERKYKTLELELMDAQKGRDETMEKLREFEQKCSQLEQNEKTLEEKLKSLENENHVLRQKALSTPFKSSRSGFAKSVSEKFSTAITSHTDRKTIFESPTPTKLIAPLTVGLSDSRRSKLTAEKHQDNYEFLSKCIKENLGFKNGKPIAARIIYKCLLHWHSFENERTAIFDSIIEGINEVLKVREDDIILPYWLSNTSALLCLLQRNLRSNGFLTATAQRYPGSSGLTSRTGHFKLHFVLTKLWAAVDENGIER 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02799 738 Coils Coil 409 436 - -
Vimu1g02799 738 Gene3D - 273 325 - -
Vimu1g02799 738 Gene3D - 326 375 - -
Vimu1g02799 738 ProSiteProfiles IQ motif profile. 347 376 IPR000048 GO:0005515
Vimu1g02799 738 Coils Coil 468 544 - -
Vimu1g02799 738 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 247 323 IPR027417 -
Vimu1g02799 738 Coils Coil 444 464 - -
Vimu1g02799 738 PANTHER MYOSIN 6 293 - -
Vimu1g02799 738 Pfam IQ calmodulin-binding motif 277 295 IPR000048 GO:0005515
Vimu1g02799 738 Pfam IQ calmodulin-binding motif 302 319 IPR000048 GO:0005515
Vimu1g02799 738 Pfam IQ calmodulin-binding motif 325 344 IPR000048 GO:0005515
Vimu1g02799 738 Gene3D - 2 77 - -
Vimu1g02799 738 Coils Coil 360 390 - -
Vimu1g02799 738 ProSiteProfiles IQ motif profile. 302 328 IPR000048 GO:0005515
Vimu1g02799 738 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 319 374 IPR027417 -
Vimu1g02799 738 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 78 IPR027417 -
Vimu1g02799 738 SMART iq_5 275 297 IPR000048 GO:0005515
Vimu1g02799 738 SMART iq_5 61 83 IPR000048 GO:0005515
Vimu1g02799 738 SMART iq_5 323 345 IPR000048 GO:0005515
Vimu1g02799 738 SMART iq_5 346 368 IPR000048 GO:0005515
Vimu1g02799 738 SMART iq_5 38 60 IPR000048 GO:0005515
Vimu1g02799 738 SMART iq_5 298 320 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02799 Vimu-Chr1 40288192 40297518 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02799 13 75 Myosins gene family AT4G33200 73.016 2.83e-22 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02799 K10357 - gmx:100790815 790.801