Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02798 ATGGTCTACTGGGATGGAGCACAGTCAGCCAATGTGGACAATAGTGAAAGAGACCTACTGTTGGCAACATTGTGTACTCGTTCAATACAAACTCGTGAAGGAAGTATTGTCAAGGCCCTTGATTGCAATGCTGCTGTTGCTGGCCGTGATGCTTTGGCGAAAACTGTTTACGCTCGTTTATTTGATTGGCTTGTTGATAAGATCAATATGTCTGTTGGGCAAGACATCAATTCCAAGATGCAGATTGGAGTTTTGGATATTTATGGTTTTGAGTGCTTTAAGGATAATAGTGACCTTTCCTATATGATTGTTTTTCTCATCTCAATAACATTCACTTCCAACAGTTTTGAGCAATTTTGCATCAATTTTGCAAATGAAAAGCTTCAGCAACATTTTAATGAGCATGTCTTCAAGATGGAACAGGATGAGTACGGCAAAGAAGAAATTAACTGGAGTTACATTGAATTTGTAGATAACAAAGATGTTTTAGATTTAATTGAAAAGAAACCCATTGGTATCATTGCTCTGTTGGATGAAGCTTGTATGTTTCCAAAGTCGACTCACGAAACATTCTCAACCAAGTTGTTTCAGCATTTCCGATCTCACCCTAGGTTGGGAAAAGAAAAGTTTTCACAAACAGATTTTAGTATTTCTCATTATGCTGGAAAGGTCACGTATCATACAGATACATTTTTAGACAAAAATCGTGATTATGTTGTAGTAGAACATTGCAATCTCTTATCTTCTTCAAAATGCCCTTTCGTTTCTGGTCTATTTCCTTTGCTATCTGAAGAATCTTCAAGATCATCATACAAGTTTTCTTCAGTAGCTGCTAGATTTAAGCAACAACTTCAAGCACTCATGGAGACCCTAAACTCAACAGAGCCTCACTACATACGATGTGTGAAACCAAATTCTTTGAATCGACCACAACAATTTGAAAATGCAAGTGTCATACACCAGTTACGCTGTGGGGTTAGTATTTTAGATGTTCTAAACCCTTTAATTCAAGCTGTTGAAAGAGATACAGCCAATTTCTTACTGCAGTACACAATAGGGTGTAATTGGGCTCTTTGGGTTGTTGATGATAAGGGTGTCCTTGAGGCTGTTCGAATAAGTCTGGCAGGTTATCCCACTCGAAGAACTTACTCAGAGTTTGTGGATCGTTTTGGGTTGATAGCTTCTGAATTTATGGATGGAAGGTGA 1206 0.3798 MVYWDGAQSANVDNSERDLLLATLCTRSIQTREGSIVKALDCNAAVAGRDALAKTVYARLFDWLVDKINMSVGQDINSKMQIGVLDIYGFECFKDNSDLSYMIVFLISITFTSNSFEQFCINFANEKLQQHFNEHVFKMEQDEYGKEEINWSYIEFVDNKDVLDLIEKKPIGIIALLDEACMFPKSTHETFSTKLFQHFRSHPRLGKEKFSQTDFSISHYAGKVTYHTDTFLDKNRDYVVVEHCNLLSSSKCPFVSGLFPLLSEESSRSSYKFSSVAARFKQQLQALMETLNSTEPHYIRCVKPNSLNRPQQFENASVIHQLRCGVSILDVLNPLIQAVERDTANFLLQYTIGCNWALWVVDDKGVLEAVRISLAGYPTRRTYSEFVDRFGLIASEFMDGR 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02798 401 Gene3D - 100 294 - -
Vimu1g02798 401 ProSiteProfiles Myosin motor domain profile. 1 401 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu1g02798 401 PANTHER MYOSIN 17 325 - -
Vimu1g02798 401 SMART MYSc_2a 1 401 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu1g02798 401 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 324 IPR027417 -
Vimu1g02798 401 PRINTS Myosin heavy chain signature 152 180 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu1g02798 401 PRINTS Myosin heavy chain signature 99 127 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu1g02798 401 Pfam Myosin head (motor domain) 110 325 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu1g02798 401 Pfam Myosin head (motor domain) 20 98 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu1g02798 401 Gene3D Myosin VI head, motor domain, U50 subdomain 16 272 - -
Vimu1g02798 401 Gene3D Kinesin motor domain 75 325 IPR036961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02798 Vimu-Chr1 40280938 40285149 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02798 9 399 Myosins gene family AT4G33200 69.565 2.60e-180 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02798 K10357 - gmx:100790815 600.512