Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02796 ATGAATCTGCTCCACGGCTCCAAGGTTTGGGTCGAGGACCGGGATTCTGCCTGGCTGCCAGCTGAAGTGCTCGATTCCGACGGTAACGAGATTCTGCTACTAACTGATTCCGGCAAGAAGGTGTTTGCTTCCAAGGAGAAACTGTTCCCGAGGGATGCTGACGAAGAGGAGCATGGCGGATTCGAAGACATGACGCGGTTGGCGTACTTGAACGAGCCTGGAGTGATGTTCAATCTTCGAAGAAGATACGCGCTCAATGATATCTATGTGAGTGTTTGCTTTTGGATAGTCGATATTCTTATTATTGGAAAGTGGAGTGGTCATACGGAAGTATTGTTTTTAGGTTTTAGTAGCTTTGAATTTCTCGAGTATGGTTACTTGATTGTTTGGCTTACACGTAAAATCAATTCCGGACAACTTGACGTGTGTATGAGTGTAAAACGCGTAGCTGAGACATATACAGGCAGCATTTTAATAGCCGTTAATCCGTTCACAAAGCTTCCACATTTATATGATTCCCATATGATGGAGCAATATAAGGGAGCTCCATTGGGTGAGCTTAGCCCACATGTTTTTGCTGTCGCTGATGCATCATACAGAGCAATGATGAATGAAGGTAAAAGTCAATCTATCTTGGTTAGCGGTGAAAGTGGTGCTGGAAAAACTGAGACAACAAAATTGATCATGCAGTATCTTACCTTTGTTGGTGGACGTGCTGCTGGTGATGATAGAACAGTTGAACAACAAGTTCTTGAATCCAATCCACTTCTAGAGGCGTTTGGTAATGCAAGAACTGTTAGGAATGACAATTCGAGGTGA 819 0.4383 MNLLHGSKVWVEDRDSAWLPAEVLDSDGNEILLLTDSGKKVFASKEKLFPRDADEEEHGGFEDMTRLAYLNEPGVMFNLRRRYALNDIYVSVCFWIVDILIIGKWSGHTEVLFLGFSSFEFLEYGYLIVWLTRKINSGQLDVCMSVKRVAETYTGSILIAVNPFTKLPHLYDSHMMEQYKGAPLGELSPHVFAVADASYRAMMNEGKSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRTVEQQVLESNPLLEAFGNARTVRNDNSR 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02796 272 Pfam Myosin head (motor domain) 151 271 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu1g02796 272 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 271 IPR027417 -
Vimu1g02796 272 Gene3D Kinesin motor domain 8 272 IPR036961 -
Vimu1g02796 272 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 4 53 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vimu1g02796 272 SMART MYSc_2a 53 272 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu1g02796 272 PRINTS Myosin heavy chain signature 255 272 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu1g02796 272 PRINTS Myosin heavy chain signature 151 170 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu1g02796 272 PRINTS Myosin heavy chain signature 208 233 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu1g02796 272 PANTHER MYOSIN 51 271 - -
Vimu1g02796 272 ProSiteProfiles Myosin motor domain profile. 152 272 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02796 Vimu-Chr1 40271778 40273600 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02796 1 271 Myosins gene family AT4G33200 53.506 6.07e-85 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02796 K10357 - vum:124845124 239.965