Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02794 ATGGCATTTCGATTTGGGGTTGTCATTTTGTCTTTGCTATTTTGTTTGAGTGTTAACTCCGTGGAATCTGATGATGGTGAGTGTTTACAGTTTCAAGTTTCTGTTTGTGTGTTTGGATTCTTTGGCATGGCAATTGCCGCCAGTTTTATGGGGAGGGAGAACGGGAGCTTAACAATGGTGAAAGTTGTTGTGGCTATGTGGTTCTTAACAGAGAGGTGTATGACTTACTCACAATCATCTGATTATTGTGCCTGGAGAGGGATAACATGCGACAATGTCACATTTAATGTTGTTGCACTCAATCTTTCTGGGTTGAATCTTGATGGGGAAATTTCACCTGCAATAGGGAAGCTGCAGAGTTTGGTCTCTATTGACCTGAGAGAAAACAGGTTATCAGGGCAGATGCCAGATGAGATCGGTGATTGTTCTTCATTGAAGAACCTGGACTTGTCATTTAATGAAATTAGAGGGGATATCCCATTTTCTATTTCTAAGTTGAAACAATTGGAGAATCTGATTTTGAAGAACAACCAGTTGATTGGACCAATTCCTTCAACTTTGTCTCAGATTCCTAATTTGAAGATTTTAGACCTAGCTCAAAATAATCTAAGTGGAGAAATACCAAAGCTTATATACTGGAACGAAGTTTTGCAGTATCTGGGCTTGAGAGGAAACAATTTGATTGGTTCACTATCACCAGATATGTGCCAGTTAACTGGGCTGTGGTATTTTGATGTGAGAAACAATAGCCTAACAGGAAGTATTCCAGAAAACATTGGCAATTGTACTACCTTCCAGGTTTTGTATGTAATCCAATTGCATGAAAGGCTCTGCCATTCTTGGTCTTGTTTTCCTTTTACCTTTCTTATGTCTTCCATTGATGCCAGGGACTTATCCTACAACCAGCTAACTGGAGAGATACCATTCAATATTGGATTCTTGCAAATAGCCACTTTGTCATTGCAAGGCAATAAACTCTCTGGACATATTCCATCGGTGATTGGTCTCATGCAAGCACTTGCTGTCTTAGACTTGAGCTGTAACATGTTAAGTGGACCAATCCCTCCTATCTTGGGAAATCTGACATACACAGAAAAATTATACTTGCATGGAAACAAGCTGACTGGCTTCATTCCCCCGGAGCTTGGAAATATGACAAAACTTCACTATTTAGAACTAAATGACAATCATCTAAGTGGACATATTCCCCCTGAGCTTGGAAAACTTACCGATTTGTTTGACTTAAATGTTGCTAATAACAATCTCGAAGGTACAATTCCGAGTAATATCAGCTCATGTAAAAATCTCAACAGCCTCAATGTGCATGGAAACAAGTTGAATGGAACAATTCCCCCTGCTTTGCAAAGCTTGGAGAGCATGACCTCTTTGAATCTTTCTTCCAACAATCTCCAGGGTGCAATTCCAATCGAACTGTCACGGATTGGTAATTTGGATACTTTGGATATTTCAAACAATCATTTAGTTGGATCCATTCCTTCTTCCCTTGGTGACTTGGAACATCTTCTGAAGTTGAATCTAAGCAGAAACAATTTGACAGGAGTTATTCCAGCAGAATTTGGAAATCTTAGAAGTGTCATGGAAATTGATCTTTCAAATAATGAACTCTCTGGCCTGATTCCTGAAGAACTTAGCCAGCTTCAGAACATGATATCATTGAGACTTGAAAACAACAAATTAACTGGTGATGTGGCATCACTTTCGAATTGCCTTACTCTCTCTGTGCTTAATGTGTCCTATAACAAACTATTTGGTGTTATCCCCACTAGTAACAACTTTACCAGGTTTCCCCCTGATAGTTTCATCGGAAACCCTGGTCTTTGTGGTAATTGGCTGAATTTGCCATGCCATGGTTCTCGACCTGCAGAGCGAGTTACATTATCTAAGGCAGCCATTCTTGGAATTACTCTTGGTGCCCTTGTGATTCTTCTAATGGTATTGCTGGCAGCTTGCCGACCACACAGTCCTCCTTTTCATGATGGATCACTTGACAAACCAGTTAATTACTCACCTCCAAAACTAGTGATTCTTCATATGAATATGGCACTTCATGTGTATGAAGATATCATGAGGATGACAGAAAACTTGAGTGAGAAGTATATAATTGGATATGGTGCGTCAAGTACAGTTTATAAATGTGTTCTCAAGAATTGCAAGCCAGTGGCTATCAAGAGGATCTATTCTCACTATCCCCAATGCATTAAAGAATTCGAAACTGAACTTGAGACTGTTGGCAGCATTAAGCACCGGAATCTAGTCAGTCTCCAAGGCTACTCTTTATCCCCTTATGGCCACCTTCTGTTTTATGACTACATGGAAAATGGCAGTCTGTGGGATCTTCTTCATGGTAAATACATGCTATTTCTTTTTCTAGTCTTTTCTAATGCATATAACCCTTCATTAAGAAGTAGGATCTGCCAGAATCTCCTGTTAAATAGAAAATTACTGTATAATGAGCATACCGATACGACCAAGATTTTGTCCAAGGCAGCAACCAATGCTGTAATGGAAACAGTTGATCCAGACATTACTGCCACATGCAAAGACCTTGGAGCTGTGAAAAAGGTGTACCAGCTCGCTCTATTATGCACAAAGAGGCAGCCAGCTGACAGGCCTACAATGCACGAAGTGACAAGAGTACTTGGGAGCCTTGTGCCATCAAACGCCCCTCCAAAACAACCAGCTGCACCACCTCCTACTTCAAATCCATCTTCCAAAGTGCCATGCTACATGGACGAGTATGCAAACCTCAAGACTCCACACTTGGTGAACTGCCCCTCAATGAGCACATCAGATGCACAGCTCTTCCTCAAGTTTGGAGAAGTAATCTCTCAGAACAGTGAGTGA 2865 0.4063 MAFRFGVVILSLLFCLSVNSVESDDGECLQFQVSVCVFGFFGMAIAASFMGRENGSLTMVKVVVAMWFLTERCMTYSQSSDYCAWRGITCDNVTFNVVALNLSGLNLDGEISPAIGKLQSLVSIDLRENRLSGQMPDEIGDCSSLKNLDLSFNEIRGDIPFSISKLKQLENLILKNNQLIGPIPSTLSQIPNLKILDLAQNNLSGEIPKLIYWNEVLQYLGLRGNNLIGSLSPDMCQLTGLWYFDVRNNSLTGSIPENIGNCTTFQVLYVIQLHERLCHSWSCFPFTFLMSSIDARDLSYNQLTGEIPFNIGFLQIATLSLQGNKLSGHIPSVIGLMQALAVLDLSCNMLSGPIPPILGNLTYTEKLYLHGNKLTGFIPPELGNMTKLHYLELNDNHLSGHIPPELGKLTDLFDLNVANNNLEGTIPSNISSCKNLNSLNVHGNKLNGTIPPALQSLESMTSLNLSSNNLQGAIPIELSRIGNLDTLDISNNHLVGSIPSSLGDLEHLLKLNLSRNNLTGVIPAEFGNLRSVMEIDLSNNELSGLIPEELSQLQNMISLRLENNKLTGDVASLSNCLTLSVLNVSYNKLFGVIPTSNNFTRFPPDSFIGNPGLCGNWLNLPCHGSRPAERVTLSKAAILGITLGALVILLMVLLAACRPHSPPFHDGSLDKPVNYSPPKLVILHMNMALHVYEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKRIYSHYPQCIKEFETELETVGSIKHRNLVSLQGYSLSPYGHLLFYDYMENGSLWDLLHGKYMLFLFLVFSNAYNPSLRSRICQNLLLNRKLLYNEHTDTTKILSKAATNAVMETVDPDITATCKDLGAVKKVYQLALLCTKRQPADRPTMHEVTRVLGSLVPSNAPPKQPAAPPPTSNPSSKVPCYMDEYANLKTPHLVNCPSMSTSDAQLFLKFGEVISQNSE 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02794 954 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 673 777 - -
Vimu1g02794 954 Gene3D Ribonuclease Inhibitor 64 211 IPR032675 -
Vimu1g02794 954 Gene3D Ribonuclease Inhibitor 283 625 IPR032675 -
Vimu1g02794 954 Pfam Leucine rich repeat 120 179 IPR001611 GO:0005515
Vimu1g02794 954 Pfam Leucine rich repeat 415 470 IPR001611 GO:0005515
Vimu1g02794 954 Pfam Leucine rich repeat 483 542 IPR001611 GO:0005515
Vimu1g02794 954 Pfam Protein kinase domain 705 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02794 954 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 189 790 - -
Vimu1g02794 954 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 352 625 - -
Vimu1g02794 954 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 215 272 - -
Vimu1g02794 954 SUPERFAMILY L domain-like 278 618 - -
Vimu1g02794 954 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 62 214 - -
Vimu1g02794 954 ProSitePatterns Protein kinases ATP-binding region signature. 708 730 IPR017441 GO:0005524
Vimu1g02794 954 ProSiteProfiles Leucine-rich repeat profile. 144 167 IPR001611 GO:0005515
Vimu1g02794 954 SUPERFAMILY L domain-like 78 270 - -
Vimu1g02794 954 MobiDBLite consensus disorder prediction 890 913 - -
Vimu1g02794 954 ProSiteProfiles Leucine-rich repeat profile. 192 214 IPR001611 GO:0005515
Vimu1g02794 954 Gene3D Ribonuclease Inhibitor 212 282 IPR032675 -
Vimu1g02794 954 Gene3D Transferase(Phosphotransferase) domain 1 811 898 - -
Vimu1g02794 954 Gene3D Phosphorylase Kinase; domain 1 675 777 - -
Vimu1g02794 954 ProSiteProfiles Protein kinase domain profile. 702 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02794 954 MobiDBLite consensus disorder prediction 896 910 - -
Vimu1g02794 954 SUPERFAMILY Protein kinase-like (PK-like) 692 905 IPR011009 -
Vimu1g02794 954 SMART LRR_typ_2 238 262 IPR003591 -
Vimu1g02794 954 SMART LRR_typ_2 190 214 IPR003591 -
Vimu1g02794 954 SMART LRR_typ_2 118 142 IPR003591 -
Vimu1g02794 954 SMART LRR_typ_2 457 481 IPR003591 -
Vimu1g02794 954 SMART LRR_typ_2 505 528 IPR003591 -
Vimu1g02794 954 SMART LRR_typ_2 529 552 IPR003591 -
Vimu1g02794 954 SMART LRR_typ_2 385 409 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02794 Vimu-Chr1 40251123 40258246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02794 815 891 Receptor kinase-like Gene Family AT5G07180 57.143 4.78e-18 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Vimu1g02794 Pkinase 5.4e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02794 K20718 - cpap:110809270 1323.53