Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu1g02787 | ATGGTAATCTGGTTTCAAGAGTATCCTAGTGTTTTTTGTGATAACTTGCAGAAAGTTCCAAAGGAGTTTTTGAAGAAATTGAACGAAGACTTGTCGAGTAATGCAATTCTCAGTAGCTCTTCTTCTGGTGACAAGTGGCAAGTAAGTGTTCTAAAGAAAGGAAGCCAAGTGTATATGCAAAATGGTTGGCCAAAGTTTGTGACAGATAACTCAATTGTGCATCATGATGTACTGCTTTTTACTTATCATGGAGAGAATTGTTTCCATGTTCAAATTTTTGATAAGAATGGAGTGGAGATGTTATGCCTCAAAGAAACAACACAAGATAAAAAAGGTTTGGGAACAAATATGCCTTGTGGAAACAAAGGCTTCATTTTTACTAGTAATGAGACAATGAAAACAGGACAAAAACAAACTGCCACCCCAAGTTTGGCAAAGAAGCATAAAGAAAGAAAATCTTCTCTTGGAAAGTCTCATGAAGAAGGTAAACATGATGTTTAA | 501 | 0.3553 | MVIWFQEYPSVFCDNLQKVPKEFLKKLNEDLSSNAILSSSSSGDKWQVSVLKKGSQVYMQNGWPKFVTDNSIVHHDVLLFTYHGENCFHVQIFDKNGVEMLCLKETTQDKKGLGTNMPCGNKGFIFTSNETMKTGQKQTATPSLAKKHKERKSSLGKSHEEGKHDV | 166 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu1g02787 | 166 | Pfam | B3 DNA binding domain | 10 | 96 | IPR003340 | GO:0003677 | |
Vimu1g02787 | 166 | ProSiteProfiles | B3 DNA-binding domain profile. | 2 | 96 | IPR003340 | GO:0003677 | |
Vimu1g02787 | 166 | SMART | B3_2 | 12 | 96 | IPR003340 | GO:0003677 | |
Vimu1g02787 | 166 | MobiDBLite | consensus disorder prediction | 130 | 166 | - | - | |
Vimu1g02787 | 166 | MobiDBLite | consensus disorder prediction | 143 | 166 | - | - | |
Vimu1g02787 | 166 | Gene3D | - | 4 | 98 | IPR015300 | - | |
Vimu1g02787 | 166 | SUPERFAMILY | DNA-binding pseudobarrel domain | 13 | 97 | IPR015300 | - | |
Vimu1g02787 | 166 | CDD | B3_DNA | 19 | 94 | IPR003340 | GO:0003677 | |
Vimu1g02787 | 166 | PANTHER | B3 DOMAIN-CONTAINING | 18 | 133 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu1g02787 | Vimu-Chr1 | 40168750 | 40169391 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu1g02787 | 14 | 100 | B3 DNA Binding Superfamily | AT3G17010 | 32.955 | 2.41e-12 | 61.6 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | B3 | Vimu1g02787 | B3 | 1.2e-14 | CL0405 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu1g02787 | - | - | vra:106778427 | 240.736 |