Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02787 ATGGTAATCTGGTTTCAAGAGTATCCTAGTGTTTTTTGTGATAACTTGCAGAAAGTTCCAAAGGAGTTTTTGAAGAAATTGAACGAAGACTTGTCGAGTAATGCAATTCTCAGTAGCTCTTCTTCTGGTGACAAGTGGCAAGTAAGTGTTCTAAAGAAAGGAAGCCAAGTGTATATGCAAAATGGTTGGCCAAAGTTTGTGACAGATAACTCAATTGTGCATCATGATGTACTGCTTTTTACTTATCATGGAGAGAATTGTTTCCATGTTCAAATTTTTGATAAGAATGGAGTGGAGATGTTATGCCTCAAAGAAACAACACAAGATAAAAAAGGTTTGGGAACAAATATGCCTTGTGGAAACAAAGGCTTCATTTTTACTAGTAATGAGACAATGAAAACAGGACAAAAACAAACTGCCACCCCAAGTTTGGCAAAGAAGCATAAAGAAAGAAAATCTTCTCTTGGAAAGTCTCATGAAGAAGGTAAACATGATGTTTAA 501 0.3553 MVIWFQEYPSVFCDNLQKVPKEFLKKLNEDLSSNAILSSSSSGDKWQVSVLKKGSQVYMQNGWPKFVTDNSIVHHDVLLFTYHGENCFHVQIFDKNGVEMLCLKETTQDKKGLGTNMPCGNKGFIFTSNETMKTGQKQTATPSLAKKHKERKSSLGKSHEEGKHDV 166
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02787 166 Pfam B3 DNA binding domain 10 96 IPR003340 GO:0003677
Vimu1g02787 166 ProSiteProfiles B3 DNA-binding domain profile. 2 96 IPR003340 GO:0003677
Vimu1g02787 166 SMART B3_2 12 96 IPR003340 GO:0003677
Vimu1g02787 166 MobiDBLite consensus disorder prediction 130 166 - -
Vimu1g02787 166 MobiDBLite consensus disorder prediction 143 166 - -
Vimu1g02787 166 Gene3D - 4 98 IPR015300 -
Vimu1g02787 166 SUPERFAMILY DNA-binding pseudobarrel domain 13 97 IPR015300 -
Vimu1g02787 166 CDD B3_DNA 19 94 IPR003340 GO:0003677
Vimu1g02787 166 PANTHER B3 DOMAIN-CONTAINING 18 133 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vimu1g02787 Vimu-Chr1 40168750 40169391 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02787 14 100 B3 DNA Binding Superfamily AT3G17010 32.955 2.41e-12 61.6
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu1g02787 B3 1.2e-14 CL0405
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02787 - - vra:106778427 240.736