Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02785 ATGGGGTGGGGTCACCTTGGAAGGAATGGGTCAGATTCAGGCGACGGAACGGAGGCTGGTCCGAGCTCCACCGCCACCGTGCCACGGCGTTTCCCACTGGCGGCACAGCCAGAAATGATGCGTGCCGCCGAGAAGGACGATCAATACGCATCTTTCGTTTACGAAGCTTGTCGTGATGCCTTTCGCCACCTCTTTGTGTATTCTGTTGTTGCTGTAACTCTTGCCACAGGTACGAGAGTTGCAGTGGCTTACCAAAACGAGACGAAACTCTTAGGGCAGATGCTTTACTACGTTCTCACAACTGGCTCCGGACAACAAACCCTTGGAGAGGAATACTGCGACATCACTCAGTGTGAAAAGTGTCGACAAATACGACCTCTGGGATGCAAATATCTCAAAATCCTCGAGGGTGTGGTTGCAGGAACTTATGGACTTCCTCCTACGCCTGCGAGGCGTGCTCTTTTCATTGTGTATCAGACGGCTATTCCATATATGGCAGAACGAATTAGGTTGATAATTGCTGATTCATTGGATGTTTACTTTTCATTCCAATTTATACGATTGAGCTCCGCGCCTGTCAAATTTTGCATTGTCCTTGCTGATTCAGAATCTGCCGAGGGTTTTGGAGAAAATGCCCACAGGAGCTCTGGTTCTCAGATTTCTGGCACTGGTCCTTTATCCTCGTCGGGACAATCTGTGACAACTCTGTCAAGGTTGAAGGGGAAACTGAGTGCATTTTGGTTGCATTTGGTTCAGAGATGGCCCACGATGCTCCCTTTTGTTCGTGAGTTCTTGCAGTTGGCTCTTCGTGCTAACCTCATGTTATTCTACTTTGAAGCTGCTGAAGGTCTCCGCCGAAGAAATTTTACTTCAATTGCTGGTTCAGTTCATCAAGCATCCTTTGCATCCCACGATAGATCAGCAGGACATGGTTTACCTGTTTTAAATGAAGAGGGTAATCTGGCAACTCCAGATATGGAGAAAGGAAGTTGGGTCTCTGATTCTTCATCTTCTGAGCATCATGCAGTTAGTGGGGTTAGCAAGTGCACACTTTGCCTGAGTAATCGTCAATACCCAACAGCTACTTCCTGTGGCCATGTATTCTGCTGGAACTGTATCACAGAATGGTGCAACGAAAAACCAGAGTGCCCTCTTTGCCGCACCCCCATAACACACTCGAGTCTAGTTTGTGTATATCATTCGGACTTCTAG 1212 0.4785 MGWGHLGRNGSDSGDGTEAGPSSTATVPRRFPLAAQPEMMRAAEKDDQYASFVYEACRDAFRHLFVYSVVAVTLATGTRVAVAYQNETKLLGQMLYYVLTTGSGQQTLGEEYCDITQCEKCRQIRPLGCKYLKILEGVVAGTYGLPPTPARRALFIVYQTAIPYMAERIRLIIADSLDVYFSFQFIRLSSAPVKFCIVLADSESAEGFGENAHRSSGSQISGTGPLSSSGQSVTTLSRLKGKLSAFWLHLVQRWPTMLPFVREFLQLALRANLMLFYFEAAEGLRRRNFTSIAGSVHQASFASHDRSAGHGLPVLNEEGNLATPDMEKGSWVSDSSSSEHHAVSGVSKCTLCLSNRQYPTATSCGHVFCWNCITEWCNEKPECPLCRTPITHSSLVCVYHSDF 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02785 403 Pfam Zinc finger, C3HC4 type (RING finger) 348 392 - -
Vimu1g02785 403 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 32 401 IPR025654 GO:0005778|GO:0007031|GO:0008270|GO:0016558
Vimu1g02785 403 MobiDBLite consensus disorder prediction 209 230 - -
Vimu1g02785 403 Pfam Pex2 / Pex12 amino terminal region 46 279 IPR006845 -
Vimu1g02785 403 FunFam Peroxisome biogenesis factor 10 324 400 - -
Vimu1g02785 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 316 400 IPR013083 -
Vimu1g02785 403 SMART ring_2 349 386 IPR001841 -
Vimu1g02785 403 ProSiteProfiles Zinc finger RING-type profile. 349 387 IPR001841 -
Vimu1g02785 403 ProSitePatterns Zinc finger RING-type signature. 364 373 IPR017907 -
Vimu1g02785 403 SUPERFAMILY RING/U-box 348 392 - -
Vimu1g02785 403 MobiDBLite consensus disorder prediction 1 30 - -
Vimu1g02785 403 MobiDBLite consensus disorder prediction 208 230 - -
Vimu1g02785 403 CDD RING-HC_PEX10 347 398 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02785 345 399 C3H Transcription Factor Family AT4G28270 32.394 3.09e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02785 K13346 - gmx:100783914 588.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02785 1 40153382 40157357 Vimu1g02785 1 40153382 40157357 ECH