Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02781 GTGGAAGAATTGGAAAAGCAAGTGATGAAGGAAAGAGAAGTTGGAGTGATATACAAGAGAAGAATGGAAAGAACACAAGACTACTTAAGATACTGTCTTCAGACAGCACAAGAAAATGGAATATTAGATCTCATTCTGAGCTGCAATGGTGAATTTCAACCATCTCCACTCTCTCTTCACTCCATTACCAGCCCTCAAGCTCATTCTCATGCTCACCACCCCAATCTAGCACTCATTATTCATCAAGCTAAAACCAATGGCTGGTACATTCATCCAAATGAGATTAAATTGGAAGAAAAAATTGGGGAAGGAAGCACCGCAGAGATTCACAGAGGAACATGGCGTGGATTTGAGGTCGCAGTGAAGTGCATTTCGCAAGACTTTTTCCGTACAAACGAAAACGGCGTCGTTTACTTCTCTCAGGAACTCGAAACGCTGTCGCGGCAACGCCACAGGTTCGTGCTTCAGCTCATGGGCGCGTGCATCCAACCTCCACAGCACGCGTGGGTGGTCACCGAGTACCTGAGCACCACGCTGAAGGAGTGGCTCCATGGACCTGGGAACCGGCGCAGGGAGCGGATGGTGCCACTTCCACCCTTGCAGGAGAGAGTGGGCCGGGCCTTGGAAATAGCCCAAGCTATGCAGTACTTGCACGAGCAAAAGCCCAAACTGGTTCACCGCGACTTGAAGCCCAGCAACATTTTTCTTGATGACGCCCTGCACGTTAGAGTCGCGGACTTCGGCCATGCACGGTTCTTGGGTGACGAAGAAATGGCCCTCACCGGAGAAACAGGAACATACGTTTACATGGCACCAGAGGTAATCCGATGTGAACCTTATAATGAAAGTTGTGATGTATATAGTTTTGGGATCATACTGAACGAGCTACTAACTGGGAATTACCCTTATGTTGAGACAGAATATGGTCCCACCAAGATTGCCATGGAAGTTGTGGAGGGTAAGCTTCGACCTAAGCTTCCATGTGATGATGATGTTGATAAACTGGGAGAGCTTATTGACCTTATTTGTCTTTGTTGGGACCCAAATCCTACTACTCGACCATCCTTTGCAACAATCACCCTTTCTCTCAAAGCTTATGTTAAGAAGAATCTCATTTAA 1119 0.4718 VEELEKQVMKEREVGVIYKRRMERTQDYLRYCLQTAQENGILDLILSCNGEFQPSPLSLHSITSPQAHSHAHHPNLALIIHQAKTNGWYIHPNEIKLEEKIGEGSTAEIHRGTWRGFEVAVKCISQDFFRTNENGVVYFSQELETLSRQRHRFVLQLMGACIQPPQHAWVVTEYLSTTLKEWLHGPGNRRRERMVPLPPLQERVGRALEIAQAMQYLHEQKPKLVHRDLKPSNIFLDDALHVRVADFGHARFLGDEEMALTGETGTYVYMAPEVIRCEPYNESCDVYSFGIILNELLTGNYPYVETEYGPTKIAMEVVEGKLRPKLPCDDDVDKLGELIDLICLCWDPNPTTRPSFATITLSLKAYVKKNLI 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02781 372 Gene3D Transferase(Phosphotransferase) domain 1 197 371 - -
Vimu1g02781 372 SMART serkin_6 95 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02781 372 ProSiteProfiles Protein kinase domain profile. 95 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02781 372 ProSitePatterns Protein kinases ATP-binding region signature. 101 122 IPR017441 GO:0005524
Vimu1g02781 372 Gene3D Phosphorylase Kinase; domain 1 83 175 - -
Vimu1g02781 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Vimu1g02781 372 Pfam Protein kinase domain 97 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02781 372 SUPERFAMILY Protein kinase-like (PK-like) 72 359 IPR011009 -
Vimu1g02781 372 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 72 363 - -
Vimu1g02781 372 CDD STKc_MAP3K-like 101 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02781 Vimu-Chr1 40104338 40105814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02781 85 369 MAP Kinase Kinase Kinase AT2G17700 37.762 5.96e-51 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-8 Vimu1g02781 Pkinase 7.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02781 - - pvu:PHAVU_001G0393001 672.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02781 1 40104338 40105814 Vimu1g02781 1 40104338 40105814 ECH