Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02779 ATGGACGCAGGCTACAATCCTCGTACGGTCGAAGAGGTCTTTAGGGATTTCAAAGGTCGCAGAGCTGCTCTGATTAAAGCTCTCACCACTGATGTTGAAGAGTTCTACCAGCAGTGTGATCCCGAGAAGGAAAATCTTTGCCTTTATGGATTTCCAAGTGAGCAGTGGGAAGTCAATCTGCCAGCTGAGGAGGTGCCTCCAGAGCTTCCAGAGCCAGCATTAGGCATTAACTTTGCCAGAGATGGGATGCAGGATAAGGACTGGCTGTCTTTGGTTGCTGTACACAGTGATGCTTGGTTACTTGCTGTGGCTTTTTATTTTGGTGCTAGGTTTGGGTTTGACAAGGCTGATAGGAAGCGACTATTTAACATGATTAATGATCTTCCAACTATATTTGAGGTTGTTACTGGGATGGCCAAGAAACAAGGAAAGGAAAAGTCATCAGTTTCAAATCATAGCAGTAACAAGTCAAAATCAAACTCTAAGCGAGGTTCTGAATCAAAGAACACAAAAGCAATGCAATCAAAGGACGAGGATGATGAGGGTGTGGCTTTGGAAGCTGAAGATGAAGAGGAGCATGAAGAGACTTTCTGTGGGGCATGTGGAGAGAGCTATACTTCTGATGAGTTCTGGATTTGCTGTGACATCTGTGAGAAATGGTTCCATGGAAAGTGTGTGAAGATTACACCTGCAAGAGCTGAGCACATCAAGCAGTACAAATGTCCATCCTGCAGCAACAAGAGAGCTAGACCTTGA 756 0.4484 MDAGYNPRTVEEVFRDFKGRRAALIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQDKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFNMINDLPTIFEVVTGMAKKQGKEKSSVSNHSSNKSKSNSKRGSESKNTKAMQSKDEDDEGVALEAEDEEEHEETFCGACGESYTSDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02779 251 Pfam PHD-finger 197 247 IPR019787 -
Vimu1g02779 251 CDD PHD_AL_plant 197 247 IPR044104 -
Vimu1g02779 251 SMART PHD_3 197 245 IPR001965 -
Vimu1g02779 251 Pfam Alfin 9 137 IPR021998 GO:0006355|GO:0042393
Vimu1g02779 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Vimu1g02779 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Vimu1g02779 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 246 IPR013083 -
Vimu1g02779 251 SUPERFAMILY FYVE/PHD zinc finger 188 248 IPR011011 -
Vimu1g02779 251 MobiDBLite consensus disorder prediction 142 191 - -
Vimu1g02779 251 FunFam PHD finger alfin-like protein 190 246 - -
Vimu1g02779 251 MobiDBLite consensus disorder prediction 159 180 - -
Vimu1g02779 251 PANTHER CPG BINDING PROTEIN 6 250 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02779 Vimu-Chr1 40056028 40060329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02779 3 250 Alfin-like Transcription Factor Family AT3G42790 76.707 4.21e-127 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vimu1g02779 Alfin 2.6e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02779 K26274 - gmx:100797908 452.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02779 1 40056028 40060329 Vimu1g02779 1 40056028 40060329 ECH
Vimu10g03113 10 41868207 41870735 Vimu1g02779 1 40056028 40060329 ECH