Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02778 ATGAGTTCGAGTCCAACAACGTACGAGGAATCGCAACCCCACCCGCCCCAAGAAATAGATTGGTACATGCTCGACAAGTCCAAGTTCTTCTGCCTAGGAACAGCCCTCTTCTCCGCCGTCTCCGCCGCCCTCTACCCCGCCGTCGTTTTGAAGACACGCCAGCAAATGTCCGCCGCCGAAATCTCGTGCCGCCACATGTCGCGCTCCATCATGCGGTATGAGGGTCTCCGAGGTTTCTACCGAGGTTTCGGCACCTCCTTGATGGGAACAATCCCTGCACGTGCGCTTTACATGTCGGCGCTGGAAGTAACCAAGAGTAAAGTCGCCTCCGCCACCCTTCGATGGGGGTTCTCCGATGCCTCTGCCACTGCAATCGCTAATGCCGCAGGAGGAGTAGCTTCTGCCCTGGCGGCACAGTTGGTATGGACCCCAGTCGATGTTGTTAGCCAGAGACTCATGGTACAAGGAGTGTGCTACAGAAATGGTTTTGACGCATTCAGAAAAATTCTGGGCGTGGACGGTCCAAGAGGGTTCTACAGGGGATTCGGGGTTTCCATCGTGACCTACGCTCCCTCCAACGCGGTCTGGTGGGCTTCGTATTCGATGGTGCAGAAGCTCATCTGGGGCATGATGGGTTCGAAGAAGGAGGGTTCGAGCTTGGGAGGCGATTCGAGGGTGGTGATGGGGGTGCAAGGGTTAAGTGCAGTTATGGCAAGTGGGGTTTGTGCATTAGTGACGATGCCACTGGATACGATAAAGACGAGGTTGCAGGTGTTGGAGGCAGAGGAAGTGAGGGTCATTGAGGTGGTAAGAGATTTGGTGAGGGAAGGAGGGGTTTTGGCTTGTTATCGAGGGTTGGGACCAAGGTGTGTGTCCATGTCCATGTCTGCCGCCGCCATGATTACTACATACGAGTTCTTGAAACGTGTGTCGGCTAAGAATGTTGATAGATTAGCACTGTATTCAGTCTAG 972 0.5442 MSSSPTTYEESQPHPPQEIDWYMLDKSKFFCLGTALFSAVSAALYPAVVLKTRQQMSAAEISCRHMSRSIMRYEGLRGFYRGFGTSLMGTIPARALYMSALEVTKSKVASATLRWGFSDASATAIANAAGGVASALAAQLVWTPVDVVSQRLMVQGVCYRNGFDAFRKILGVDGPRGFYRGFGVSIVTYAPSNAVWWASYSMVQKLIWGMMGSKKEGSSLGGDSRVVMGVQGLSAVMASGVCALVTMPLDTIKTRLQVLEAEEVRVIEVVRDLVREGGVLACYRGLGPRCVSMSMSAAAMITTYEFLKRVSAKNVDRLALYSV 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02778 323 Gene3D Mitochondrial carrier domain 28 318 IPR023395 -
Vimu1g02778 323 PRINTS Mitochondrial carrier protein signature 80 98 IPR002067 GO:0055085
Vimu1g02778 323 PRINTS Mitochondrial carrier protein signature 131 153 IPR002067 GO:0055085
Vimu1g02778 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 226 310 IPR018108 -
Vimu1g02778 323 SUPERFAMILY Mitochondrial carrier 23 307 IPR023395 -
Vimu1g02778 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 122 206 IPR018108 -
Vimu1g02778 323 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 9 314 - -
Vimu1g02778 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 27 107 IPR018108 -
Vimu1g02778 323 Pfam Mitochondrial carrier protein 231 314 IPR018108 -
Vimu1g02778 323 Pfam Mitochondrial carrier protein 40 107 IPR018108 -
Vimu1g02778 323 Pfam Mitochondrial carrier protein 124 207 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02778 Vimu-Chr1 40046765 40048070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02778 9 316 Chloroplast and Mitochondria Gene Families AT1G72820 61.607 4.63e-140 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02778 K15121 - gmx:100797365 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02778 1 40046765 40048070 Vimu1g02778 1 40046765 40048070 ECH
Vimu10g03115 10 41884301 41886954 Vimu1g02778 1 40046765 40048070 ECH