Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02770 TTGTGCCATTGTTTTTTCTACTGCTTCTCATTACCTTTGAAACTTCCTAGATTTCTTACTCCTAGGAAGTGTTGTGCCAAAATGACAGACAACAATCCAAAACCACCACCTGATACACCTGACAGTGATGATTTCTGCAACCAGTGGCCTTTTGAGCTCTCTGAGTACTTGCAATTCGATGATAACCAATGGATGCATGACGATATTCCGTCTTTTTCTTCTGAGAATGTCTCGAACCAGGTTCATCAACCCAGTAATGTACGTGAGTTTGAAGGAGATGAAAGCTACTTTGAAGGGTCTTCTAGCAGAGAAACTGGTGGACGTGAGAATCGGCAAGTTGTTAGAGAGAGATTTGCATTCAAAACAATTTCAGAGATTGAAGTGCTAGACGATGGATACAGATGGAGGAAGTACGGAAAGAAAATGGTGAAGAACAACCCCAATCCAAGGAATTACTATAGATGTTCAGTGGATGGATGCTCTGTGAAGAAGAGAGTGGAGAGAGATAAGGATGACCCT 519 0.4181 MCHCFFYCFSLPLKLPRFLTPRKCCAKMTDNNPKPPPDTPDSDDFCNQWPFELSEYLQFDDNQWMHDDIPSFSSENVSNQVHQPSNVREFEGDESYFEGSSSRETGGRENRQVVRERFAFKTISEIEVLDDGYRWRKYGKKMVKNNPNPRNYYRCSVDGCSVKKRVERDKDDP 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02770 173 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 27 173 IPR044810 GO:0003700
Vimu1g02770 173 SMART WRKY_cls 129 173 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g02770 173 SUPERFAMILY WRKY DNA-binding domain 122 173 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu1g02770 173 Pfam WRKY DNA -binding domain 130 172 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g02770 173 Gene3D WRKY domain 116 173 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu1g02770 173 MobiDBLite consensus disorder prediction 75 109 - -
Vimu1g02770 173 ProSiteProfiles WRKY domain profile. 124 173 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g02770 173 MobiDBLite consensus disorder prediction 87 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02770 Vimu-Chr1 39966926 39968180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02770 62 173 WRKY Transcription Factor Family AT5G26170 47.656 1.31e-31 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu1g02770 WRKY 4e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02770 - - gmx:100796836 243.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02770 1 39966926 39968180 Vimu1g02770 1 39966926 39968180 ECH