Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02768 ATGTTGCCAAACATTGAAAATTTCCACTACTCGAAAGCTTTTCTTCTGTTCCTCATCCTCTGTATCCTTCCAATACACTTGGCTCAACCACTTTCCTTCACCATAACTAACTTTAACGACACTAAAAATGCAAGCATCGTTGGATACGCCGGCGTAGCCAAGGTTGAGGACGGATCTGTTGTGCTCAACCCAATCATCGAGAATGGAAAGGGAAGAGTCATTTATGGCCAACCTTTACGCCTAAAAAACTCTTCTGATGGACTTGCCACTGATTTTTCAACTCGTTTTTCATTCACTATCGACGCAACAGTAGCCAAATACGGTGATGGCTTTGCCTTCTTCTTGGCACCCCTTTTATACCAGATTCCGACCGCCACTTCTGATGGCTCCCTTCTCGGCCTATACGATGCCACCCAAAATAACATCATCGCTATTGAATTTGACACTTATATAAACGAGTTAGACCCACCAATGCAACACGTAGGGATCAACAATAACTCTGTGGCATCTCTCAATTATAGCAAGTTTGATATTGAAAACAACTTAGGGAAGATGGTGCATGCGTTGATAACTTACAATGCTTCTGCCCAACTCCTGGCTGTTTCGTGGTCCTTTGATGGAACTAAATCTTCTTCTACTCCTAGCGCTTATCTTTCGTACAAGATTGACCTGTGGGCAATTTTGCCGGAGTGTGTCAATGTTGGGTTTTCGGGTTCAACTGGATCGTCCACTGAGAAAAACGTGATCCATACCTGGGAGTTCAGTTCAAACCTAGATCTTAATTCTACTCATGGAGTGGAAAGTGCCATCGCAACCAAATGCGAGGTTCAGGTCAAGATAGTAGTTATTACAGTCATTTGTTCTATTGTTTTTGTGCTTGTGGTCATTAGTATTTTTTGGTTGATTATCAAAAGGAGAAGAACAGAGGACAGTTTTGGTTTAGATAGAGATGCTATGCCTAGAAGGTTTGGTTATGAGGAAATAGTTGCAGCCACAAACGGGTTTGCAGATGATAGAAGGCTGGGAGAAGGAGGCTCTGGACAAGTTTACAAAGGGTTTATGGGAGATTCAGGGCGCGTGGTTGCTGTGAAAAGGATATTTTCTGATGTTGAAGATTCTGAGAGAATATTTAGAAACGAAGTGAACATTATAAGTCGTCTTATACATAGAAACCTTGTGCAATTCATGGGGTGGTGCCAGGAGAAAGAGGAGTTGATACTGGTTTTTGAGTACATGAGTAATGGAAGCCTTGACAATCATCTGTTTGGCAACAGAAGAAGTTTGACATGGGATGTGAGATACAAGATAGCATTAGGTGTGGCTAGAGCACTTCGTTATCTTCATGAAGACGCGGAGCAGAGTGTTGTTCATAGGGACATAAAGTCAGGTAATGTTTTGTTGGACAGAGATTTCAACACAAAGATTAGTGACTTTGGGATAGCGAGGTTGGTGGATCCAAGATTGAGGACTCAGAGGACAAAGGTGGTGGGGACATATGGGTACCTAGCTCCAGAATATATAAACGGAGGGAGGGTTAGCAAAGAATCAGACATGTACAGTTTTGGGGTTTTGGCTTTGGAGATAGCATGTGGAAGGAGGACTTACCAGGATGGTGAAGATAATCATGTGCCTTTGCCGAAATGGGTATGGAAACATTATGTGGATGGGAATATTTTGAATGCTGCTGATGAGGAATTGAAGATGGATTTTGACATATATGAAATGAAATGCTTGCTCAGTGTAGGAATATGGTGTACCCTCCAAGACCACAGGGAAAGGCCAACCTCAGAACAGGTTATAAATGTTCTTAAACAAGAAGTGCCATTGCCAATGTTTTCTGCAAAATTCTCTAATAATGGGCAACCGGATCTCTTGGAATCGTCATCCAGAAAAGCATAA 1899 0.4218 MLPNIENFHYSKAFLLFLILCILPIHLAQPLSFTITNFNDTKNASIVGYAGVAKVEDGSVVLNPIIENGKGRVIYGQPLRLKNSSDGLATDFSTRFSFTIDATVAKYGDGFAFFLAPLLYQIPTATSDGSLLGLYDATQNNIIAIEFDTYINELDPPMQHVGINNNSVASLNYSKFDIENNLGKMVHALITYNASAQLLAVSWSFDGTKSSSTPSAYLSYKIDLWAILPECVNVGFSGSTGSSTEKNVIHTWEFSSNLDLNSTHGVESAIATKCEVQVKIVVITVICSIVFVLVVISIFWLIIKRRRTEDSFGLDRDAMPRRFGYEEIVAATNGFADDRRLGEGGSGQVYKGFMGDSGRVVAVKRIFSDVEDSERIFRNEVNIISRLIHRNLVQFMGWCQEKEELILVFEYMSNGSLDNHLFGNRRSLTWDVRYKIALGVARALRYLHEDAEQSVVHRDIKSGNVLLDRDFNTKISDFGIARLVDPRLRTQRTKVVGTYGYLAPEYINGGRVSKESDMYSFGVLALEIACGRRTYQDGEDNHVPLPKWVWKHYVDGNILNAADEELKMDFDIYEMKCLLSVGIWCTLQDHRERPTSEQVINVLKQEVPLPMFSAKFSNNGQPDLLESSSRKA 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02768 632 Gene3D Transferase(Phosphotransferase) domain 1 412 619 - -
Vimu1g02768 632 Pfam Protein kinase domain 336 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02768 632 ProSitePatterns Protein kinases ATP-binding region signature. 341 364 IPR017441 GO:0005524
Vimu1g02768 632 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Vimu1g02768 632 SUPERFAMILY Protein kinase-like (PK-like) 319 608 IPR011009 -
Vimu1g02768 632 SUPERFAMILY Concanavalin A-like lectins/glucanases 29 262 IPR013320 -
Vimu1g02768 632 FunFam L-type lectin-domain containing receptor kinase IX.1 412 613 - -
Vimu1g02768 632 SMART serkin_6 335 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02768 632 ProSiteProfiles Protein kinase domain profile. 335 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02768 632 Gene3D - 29 270 - -
Vimu1g02768 632 PANTHER - 50 607 - -
Vimu1g02768 632 Gene3D Phosphorylase Kinase; domain 1 320 411 - -
Vimu1g02768 632 CDD lectin_legume_LecRK_Arcelin_ConA 31 258 IPR001220 GO:0030246
Vimu1g02768 632 Pfam Legume lectin domain 31 261 IPR001220 GO:0030246
Vimu1g02768 632 FunFam L-type lectin-domain containing receptor kinase IX.1 320 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02768 Vimu-Chr1 39944371 39949454 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02768 11 615 Receptor kinase-like Gene Family AT5G10530 41.956 2.45e-153 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vimu1g02768 Pkinase 3.4e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02768 - - vra:106763733 899.427