Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02767 ATGAGGTTGCTAAAGATGGTAACAACTTTTGTTCTTCTGCTGGTTCTTCATCCTCCCTTTCTTAAACCTGCAGAATCACTAAATTTCAACATAACAAACTTCAATGACCCTGAGAGTGAAAAAAACATGGCATACATAGGTGATGGCAAAGCCAGCAACGGCAGTGTAGAACTCAACATTGTGGACTATCTTTTCCGCGTTGGAAGAGCCTTGTACGCAAAACCTCTGCACCTGTGGGACCAATCATCGAATGTTCTCACAGACTTCACCACTCACTTCACTTTCTCCATTGACAGAGCCAAAAACGGCACCTATGCTGACGGTTTCGCCTTCTACATGGCCCCTCATGGCTACCCGATTCCTCCCAACTCAGGTGGTGGCACTTTTGCCCTTTTCAATACCACCTCCAACACCTTTATTCGCCACGACGTCCTCGCAGTTGAGTTTGACACGTTCAATGGCACCATTGACCCTCCCATGCAGCACGTTGGCATAGACGATAACTCTCTCAGCTCCGTGACTTCTGCCAAATTTGACATTGACAAAAACCTGGGAAAGAAATGTAACGTTTTGATAACCTACACAGCTTCCAACAAGACCCTCTTTGTGGCTTGGTCCTTCAACGGAACAGCAACCTCACACTCCAATTCTTCACTTTCTTACACGGTTGACCTCATGGAAATTCTACCAGAGTGGGTGGATGTGGGGTTCTCCGCTTCAACAGGCGAATTCACTGAACACAACGTTATTCACTCTTGGGACTTTAGTTCAACGTTGAATTCCGATGCTACGGATAATTACTCCGGTAGGGACGGGAACGGAAAACAAAACGTTTGGGTGATTGCTGTGGTGACTCTTTCAGCGGTCTTGGTAGCCGTGGTTGCGAGTGTTGCAGTTTGGGCAATGATGACGAAGAAAAGAAGGGATAAGGTTGATAAGAGTAATGATGGTGAAGGTGGAGCCAACTTGGTTAAGTTTGATTTGGATAGAGCAACTATACCAAGAAGATTTGATTACAGAGAACTACTTGCAGCCACCAACGGATTCGCAGATGATAGAAACCTTGGACGAGGAGCTTCGGGACAGGTTTACAAAGGGATTCTGAGTGATTTGGGGAGGGTTGTTGCGGTGAAAAGGATTTTCACTAAGTTTGCAAATTCAGAGAGAGTTTTCACCAATGAGGTTAGGGTTATAAGCCGTCTTATACACAGAAACTTGGTGCAGTTCGTAGGGTGGTGCCACGAACAAGGTGAGTTTCTGTTGCTTTTTGAGTACATGCCTAATGGAAGCCTCGACACTCATCTCTTTGGGGACAAAAAACCTTTGACCTGGGATGTTAGGTACAAGGTAGCATTAGGAGTGGCTGCAGCAGTTCGTTATCTTCATGAAGATGCGGAGCAGTGTGTTCTTCACAGGGATATTAAATCAGCAAATGTGTTGTTGGACACAGATTTTAGCACGAAGCTTGGAGATTTTGGAATGGCAAAGTTTGTGGATCCAAGGTTGAGGACTCAAATGACAGGGGTGGTGGGGACTTACGGGTACCTTGCCCCAGAATACATCCACGGAGGTAGGGCTAGCAAGGAATCAGACATTTATAGTTTTGGGGTTGTGGCTCTTGAGATCGCATGTGGAAGGAGAACTTACCATGATGGAGAATTTCATGTGCCTCTGATGAACTGGGTGTGGCAACAGTATGTGAAAGGGAACGTGATGGATGTTGTTGATGAGAGATTGAACAAAGAGTTCAATGTAGATGAAATGAGAAGTTTGATCATTGTGGGGTTGTGGTGTACTAACCCTAACGACAAGGAAAGGCCAAAGGCTGCACAAGTGATAAAAGTTCTTGAACTAGAAGCGCCATTGCCAGAGCTTCCACTTGATATGCATGACCGTCTTCCTCCTTCTCTAGTTACATATTCAGAACAACCTAATTCTCAGTCCGTTCAGACACTACCTTTCACCAACAGCTTTATAAATGTTGGACGTTAA 1992 0.4523 MRLLKMVTTFVLLLVLHPPFLKPAESLNFNITNFNDPESEKNMAYIGDGKASNGSVELNIVDYLFRVGRALYAKPLHLWDQSSNVLTDFTTHFTFSIDRAKNGTYADGFAFYMAPHGYPIPPNSGGGTFALFNTTSNTFIRHDVLAVEFDTFNGTIDPPMQHVGIDDNSLSSVTSAKFDIDKNLGKKCNVLITYTASNKTLFVAWSFNGTATSHSNSSLSYTVDLMEILPEWVDVGFSASTGEFTEHNVIHSWDFSSTLNSDATDNYSGRDGNGKQNVWVIAVVTLSAVLVAVVASVAVWAMMTKKRRDKVDKSNDGEGGANLVKFDLDRATIPRRFDYRELLAATNGFADDRNLGRGASGQVYKGILSDLGRVVAVKRIFTKFANSERVFTNEVRVISRLIHRNLVQFVGWCHEQGEFLLLFEYMPNGSLDTHLFGDKKPLTWDVRYKVALGVAAAVRYLHEDAEQCVLHRDIKSANVLLDTDFSTKLGDFGMAKFVDPRLRTQMTGVVGTYGYLAPEYIHGGRASKESDIYSFGVVALEIACGRRTYHDGEFHVPLMNWVWQQYVKGNVMDVVDERLNKEFNVDEMRSLIIVGLWCTNPNDKERPKAAQVIKVLELEAPLPELPLDMHDRLPPSLVTYSEQPNSQSVQTLPFTNSFINVGR 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02767 663 CDD lectin_legume_LecRK_Arcelin_ConA 27 259 IPR001220 GO:0030246
Vimu1g02767 663 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 265 IPR013320 -
Vimu1g02767 663 FunFam L-type lectin-domain containing receptor kinase IX.1 25 273 - -
Vimu1g02767 663 FunFam L-type lectin-domain containing receptor kinase IX.1 426 626 - -
Vimu1g02767 663 ProSiteProfiles Protein kinase domain profile. 349 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02767 663 CDD STKc_IRAK 355 617 - -
Vimu1g02767 663 Gene3D Phosphorylase Kinase; domain 1 320 425 - -
Vimu1g02767 663 ProSitePatterns Protein kinases ATP-binding region signature. 355 378 IPR017441 GO:0005524
Vimu1g02767 663 SMART serkin_6 349 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02767 663 ProSitePatterns Legume lectins alpha-chain signature. 229 238 IPR000985 -
Vimu1g02767 663 Pfam Legume lectin domain 26 263 IPR001220 GO:0030246
Vimu1g02767 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Vimu1g02767 663 Gene3D Transferase(Phosphotransferase) domain 1 426 631 - -
Vimu1g02767 663 FunFam L-type lectin-domain containing receptor kinase IX.1 334 425 - -
Vimu1g02767 663 Pfam Protein kinase domain 350 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02767 663 Gene3D - 24 270 - -
Vimu1g02767 663 PANTHER - 59 621 - -
Vimu1g02767 663 SUPERFAMILY Protein kinase-like (PK-like) 333 645 IPR011009 -
Vimu1g02767 663 ProSitePatterns Legume lectins beta-chain signature. 145 151 IPR019825 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02767 Vimu-Chr1 39932836 39935101 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02767 6 629 Receptor kinase-like Gene Family AT5G10530 44.322 5.88e-173 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vimu1g02767 Pkinase 1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02767 - - vra:106763732 1162.52