Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02766 ATGAGAATGAGGTTGCTAAAGATGGTAACAACCTTTGTTCTTCTGCTGGTTCTTCATCCTCCCTTTCTTAAACCTGCAGAATCACTAAATTTCAACATAACAAACTTCAATGACCCTGAGAGTGCAAAAAACATGGCATACATAGGTGATGGCAAAGCCAGCAACGGCAGCGTAGAACTCAACATCGTCGACTATCTTTTCCGCGTTGGAAGAGCCTTGTGCGCAAAACCTCTGCACCTGTGGGACCAATCATCGAATGTTCTCACAGACTTCACCACGCGCTTCACTTTCTCCATTGACAGAGCCAAAAACGGCACCTATGCTGACGGTTTCGCCTTCTACATGGCCCCTCATGGCTACCCGATTCCTCCCAACTCAGGTGGTGGCACTTTTGCCCTTTTCAACACCACCTCCAACACCTTTATTCGCCACAACCACGTCCTCGCGGTTGAGTTTGACACGTTCAATGGCACCATTGACCCTCCCATGCAGCACGTTGGCATAGACGATAACTCTCTCAGTTCCGTGACTTCTGCCAAATTTGACATTGACAAAAACCTGGGAAAGAAATGTAACGTTTTGATAACCTACACAGCTTCCAACAAGACCCTCTTTGTGGCTTGGTCCTTCAACGGAACAGCAACGTCACACTCCAATTCTTCACTTTCTTACCCGATTGACCTCATGGAAATTCTACCCGAGTGGGTGGATGTTGGGTTCTCCGCTTCAACAGGCGAATTAACTGAACACAATGTTATTCACTCGTGGGAGTTTAGTTCAACGTTGAATTCCGATGCTACGGATGATTCCTCTGGTGAGGGGAATAAAAAACGAAACGTTTTGGTGATTGCAGCGGCGACTTCTTCGGCGGTCTTGGTGGCCGTGGTTGCGAGTGTTGCAGTTTGGCCAATGATGACGAAGAAAATAAGGGATAAGGTTCATAATAGTAGGGATGGTGAAGGTGGAACCAACTCGGTTAAGTTTGATTTGGATAGGGAAACTATACCAAGAAGGTTTGATTACAAAGAACTACTTGCAGCCACCAACGGATTCGCAGATGATCGAAAGCTTGGACGAGGAGCGTCGGGACAGGTTTACAAAGGGATTCTGAGTTATTTAGGAAGGGTTGTTGCTGTGAAAAGGATTTTCACCAACTTTTCAAATTCAGAGAGAGTTTTCACCAATGAGGTTAGGGTTATAAGCCGTCTTATACACAGAAACTTGGTGCAGTTCGTAGGGTGGTGTCACGAGCATGGTGAGTTTCTGTTGCTTTTTGAATACATGCCCAATGGAAGCCTCGACACTCATCTCTTTGGGGATAAAAAACATTTGACCTGGGATGTTAGGTACAAGGTGGCATTAGGAGTGGCTGCAGCAGTTCGTTATCTTCATGAGGATGCGGAGCAGTGTGTTCTTCACAGGGATATTAAATCAGCAAATGTGTTGTTGGACACAGATTTTAGCACGAAGCTTGGAGATTTTGGAATGGCAAAGTTTGTGGATCCGAGGTTGAGGACTCAAATGACAGGGGTGGTGGGGACTTACGGGTACCTTGCCCCAGAATACATCCACGGAGGTAGGGCTAGCAAGGAATCAGACATTTATAGTTTTGGGGTTGTAGCTCTTGAAATTGCATGTGGAAGGAGGACCTACAAAGATGGAGAGTTTCATGTGCCTCTTGTGAACTGGGTGTGGCAACAGTATATGCGAGGGAATGTTCTGAATGTTGCTGATGAGAGACTGTGCAGGGATTTTAATGTGGATGAAATGAGAAGCTTGATCATTGTGGGGTTGTGGTGTACTAACCCTAACGACAAGGAAAGACCAACGGCTACACAAGTAATAAGAGTTCTTGAGCTAGAAGCGCCATTGCCAGAGCTTCCTCTTGATATGCATGACCATCTTCCTCCTTATCTAGTTACGCATTCACAACAGACTAATTCTCAGTCCATACCTTCATTACCTTTTACTCACAGTTTCATAAGTGATGGGCGTTAG 1998 0.457 MRMRLLKMVTTFVLLLVLHPPFLKPAESLNFNITNFNDPESAKNMAYIGDGKASNGSVELNIVDYLFRVGRALCAKPLHLWDQSSNVLTDFTTRFTFSIDRAKNGTYADGFAFYMAPHGYPIPPNSGGGTFALFNTTSNTFIRHNHVLAVEFDTFNGTIDPPMQHVGIDDNSLSSVTSAKFDIDKNLGKKCNVLITYTASNKTLFVAWSFNGTATSHSNSSLSYPIDLMEILPEWVDVGFSASTGELTEHNVIHSWEFSSTLNSDATDDSSGEGNKKRNVLVIAAATSSAVLVAVVASVAVWPMMTKKIRDKVHNSRDGEGGTNSVKFDLDRETIPRRFDYKELLAATNGFADDRKLGRGASGQVYKGILSYLGRVVAVKRIFTNFSNSERVFTNEVRVISRLIHRNLVQFVGWCHEHGEFLLLFEYMPNGSLDTHLFGDKKHLTWDVRYKVALGVAAAVRYLHEDAEQCVLHRDIKSANVLLDTDFSTKLGDFGMAKFVDPRLRTQMTGVVGTYGYLAPEYIHGGRASKESDIYSFGVVALEIACGRRTYKDGEFHVPLVNWVWQQYMRGNVLNVADERLCRDFNVDEMRSLIIVGLWCTNPNDKERPTATQVIRVLELEAPLPELPLDMHDHLPPYLVTHSQQTNSQSIPSLPFTHSFISDGR 665
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02766 665 FunFam L-type lectin-domain containing receptor kinase IX.1 336 427 - -
Vimu1g02766 665 CDD lectin_legume_LecRK_Arcelin_ConA 29 262 IPR001220 GO:0030246
Vimu1g02766 665 Gene3D - 26 274 - -
Vimu1g02766 665 SUPERFAMILY Protein kinase-like (PK-like) 334 653 IPR011009 -
Vimu1g02766 665 Gene3D Transferase(Phosphotransferase) domain 1 428 633 - -
Vimu1g02766 665 ProSiteProfiles Protein kinase domain profile. 351 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02766 665 FunFam L-type lectin-domain containing receptor kinase IX.1 27 278 - -
Vimu1g02766 665 Pfam Legume lectin domain 28 269 IPR001220 GO:0030246
Vimu1g02766 665 ProSitePatterns Legume lectins alpha-chain signature. 232 241 IPR000985 -
Vimu1g02766 665 ProSitePatterns Legume lectins beta-chain signature. 148 154 IPR019825 -
Vimu1g02766 665 PANTHER - 61 623 - -
Vimu1g02766 665 FunFam L-type lectin-domain containing receptor kinase IX.1 428 628 - -
Vimu1g02766 665 Gene3D Phosphorylase Kinase; domain 1 317 427 - -
Vimu1g02766 665 SUPERFAMILY Concanavalin A-like lectins/glucanases 27 268 IPR013320 -
Vimu1g02766 665 SMART serkin_6 351 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02766 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Vimu1g02766 665 Pfam Protein kinase domain 352 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02766 665 ProSitePatterns Protein kinases ATP-binding region signature. 357 380 IPR017441 GO:0005524
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vimu1g02766 Vimu-Chr1 39909511 39911955 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02766 8 631 Receptor kinase-like Gene Family AT5G10530 44.953 2.12e-174 510
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vimu1g02766 Pkinase 6.1e-49 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02766 - - vra:106763732 1229.16