Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02762 ATGAGATTTCTAAACATGGTCACCATTTTTGTTCTACTCTTAGCCTTTCCTTCTCCTATTCTTAGAACAGTGGAATCACTAAATTTCAACATAACAAGCTTCGACGACCCTGAGAGTGCAAAAAACATGGCGTACATGGGTGACGGCAAAGCAAGGAACGGTTCCGTAGACCTTAACATAGTCTCATATTTTTTCCGTGTCGGGAGAGCCTTGTCTGCACAACCTTTGCACCTTTGGGATTCTTCGTCAAGAGTTGTAACAGACTTTACCACACGCTTCACCTTTTCTATTGAAAAAGGAAACGATGAAACAGGTTCCTACGCTGACGGTTTCGCCTTCTATATAGCCCCCCAAGGCTATCAGATTCCTCCAAACGGTGCAGGTGGCACTTTTGGCCTTTTCAATGGCACTTTCAATAGCTTCCTTCCCCAAAATCGCATTCTCGCTGTTGAGTTTGACACATTTAACGGTTCGATTGACCCTCCCATGCAGCACGTTGGCATAGACGATAACTCTCTCAAATCTGCGACTTATGGAAAGTTTGACATCGACGAAAATCTGGGGAAGAAATGCAACGCTTTGGTAACTTACACTGCTTCTAACAAGACCCTTTTTGTGGCTTGGTCCTTCAACGGAAGCGCAACGAGACACTCCTATTCTTCACTTTCTTACCAGATTGACCTCTTGGGAATTCTCCCGGAGTGGGTTGATGTTGGGTTCTCTGCTTCCACTGGCGAACTCACCGAACGAAACATCATTCACTCGTGGGAGTTCAGTTCCACGCTCAATTCAACTGCTTCGAAAGATAACCCCTCCGGTGGAAATGAGAAGAGCGGGAAAGCGTTGAGCATGGCTATGGTGGTTGTTGTGGTGGCGTGTTCAATGGTTTTGGTGGCCGTGGCAGCGAATGTTGCAGCTTGGATGGTAATCATGAAGAAGAGAAGGGGTAAGGGCGATTGTGGTTATGATGATAGTGGTAAAGGTCGTTCGGCTAGGTTTGGTTTGGATAGGGAAAGTATACCGAGAAGGTTTGATTACACAGAACTAGTTGAAGCCACCAAAGGGTTTGCGGATGAAACAAGGCTTGGAAGAGGAGGGTCGGGACAGGTTTACAAAGGGGTTCTGAGCTATTTAGGAAGGGTTGTTGCTGTGAAAAGAATTTTCACTAACTTTGAAAATTCAGAGAGGGTTTTCATCAACGAGGTTAAGATCATAAGCCGTCTTATACACAGAAACTTGGTGCAGTTCGTAGGGTGGTGCCACGAGCAAGGTGAATTTCTGTTGGTTTTTGAGTACATGCCTAATGGAAGCCTCGACACTCATCTCTTTGGCGACAAGAAAACTTTGACCTGGGATATTAGGTACAAGGTAGCACTGGGCGTGGCTTTGGCACTTCGTTATCTTCATGAGGATGCGGAGCAGAGTGTTCTTCACAGGGATATTAAGTCGGCGAATGTGTTGTTGGACACTGATTTTAGCACAAAACTTGGAGATTTTGGGATGGCAAAGTTGGTGGATCCAAGGTTAAAGACTCAGAGGACAGGGGTGGTGGGGACTTACGGGTACCTTGCCCCAGAATACCTGAACGGAGGTAGGGCTAGCAAGGAATCAGACATGTATAGTTTTGGGGTTGTGGCTCTTGAGCTTGCATGTGGAAGGAGGACTTACCGTGATGGAGAGTTTCATGTGCCATTGATGAACTGGGTGTGGCAACAGTATGTGGAAGGGAATGTGATGGATGTTGTTGATGAGAGATTGAAGAAGGAGTTTGATGTGGATAAAATGAGAAGCTTGATCATTGTTGGATTGTGGTGTACTAACCCTAACGACAAGGAAAGGCCAAAGGCTGCACAAGTGATAAAAGTTCTTGAGCTAGAAGCACCATTGCCAGAGCTTCCACTTGATATGCATGATCGTCCTCCTCTCTCTCTAAGTACTTACACGCATGCACAACCCAATTATAATTCCTTACAATCTCTACCCTTCTCTAACAGTTTTGTCAGTACTGGACGTTAA 2016 0.4559 MRFLNMVTIFVLLLAFPSPILRTVESLNFNITSFDDPESAKNMAYMGDGKARNGSVDLNIVSYFFRVGRALSAQPLHLWDSSSRVVTDFTTRFTFSIEKGNDETGSYADGFAFYIAPQGYQIPPNGAGGTFGLFNGTFNSFLPQNRILAVEFDTFNGSIDPPMQHVGIDDNSLKSATYGKFDIDENLGKKCNALVTYTASNKTLFVAWSFNGSATRHSYSSLSYQIDLLGILPEWVDVGFSASTGELTERNIIHSWEFSSTLNSTASKDNPSGGNEKSGKALSMAMVVVVVACSMVLVAVAANVAAWMVIMKKRRGKGDCGYDDSGKGRSARFGLDRESIPRRFDYTELVEATKGFADETRLGRGGSGQVYKGVLSYLGRVVAVKRIFTNFENSERVFINEVKIISRLIHRNLVQFVGWCHEQGEFLLVFEYMPNGSLDTHLFGDKKTLTWDIRYKVALGVALALRYLHEDAEQSVLHRDIKSANVLLDTDFSTKLGDFGMAKLVDPRLKTQRTGVVGTYGYLAPEYLNGGRASKESDMYSFGVVALELACGRRTYRDGEFHVPLMNWVWQQYVEGNVMDVVDERLKKEFDVDKMRSLIIVGLWCTNPNDKERPKAAQVIKVLELEAPLPELPLDMHDRPPLSLSTYTHAQPNYNSLQSLPFSNSFVSTGR 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02762 671 CDD STKc_IRAK 362 624 - -
Vimu1g02762 671 ProSitePatterns Protein kinases ATP-binding region signature. 362 385 IPR017441 GO:0005524
Vimu1g02762 671 Gene3D Phosphorylase Kinase; domain 1 341 432 - -
Vimu1g02762 671 Gene3D - 24 273 - -
Vimu1g02762 671 FunFam L-type lectin-domain containing receptor kinase IX.1 25 277 - -
Vimu1g02762 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Vimu1g02762 671 Gene3D Transferase(Phosphotransferase) domain 1 433 638 - -
Vimu1g02762 671 Pfam Protein kinase domain 357 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02762 671 SMART serkin_6 356 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02762 671 Pfam Legume lectin domain 26 269 IPR001220 GO:0030246
Vimu1g02762 671 PANTHER - 59 628 - -
Vimu1g02762 671 ProSitePatterns Legume lectins alpha-chain signature. 232 241 IPR000985 -
Vimu1g02762 671 ProSitePatterns Legume lectins beta-chain signature. 148 154 IPR019825 -
Vimu1g02762 671 SUPERFAMILY Protein kinase-like (PK-like) 339 654 IPR011009 -
Vimu1g02762 671 ProSiteProfiles Protein kinase domain profile. 356 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02762 671 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 263 IPR013320 -
Vimu1g02762 671 FunFam L-type lectin-domain containing receptor kinase IX.1 433 633 - -
Vimu1g02762 671 CDD lectin_legume_LecRK_Arcelin_ConA 27 262 IPR001220 GO:0030246
Vimu1g02762 671 FunFam L-type lectin-domain containing receptor kinase IX.1 341 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02762 Vimu-Chr1 39866091 39868204 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02762 5 636 Receptor kinase-like Gene Family AT5G10530 43.390 3.66e-169 497
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vimu1g02762 Pkinase 3.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02762 - - gmx:100305427 1027.7