Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02761 ATGCCGAAATATAGCTTTTTCTCGGACATAGACTCTGTTGTGTTGCCTACCATGAAAAGTTTCCACAACTTCAAAACTTGTTTTCTTTTCTACATCTTCCTCCTTCTTCCAATAACCATAGCTCAACCACTCTCCTTCAACATAACTAACTTTAACGATACTCAAACTGCAAGCCTTGTTGGATACGCTGGTGTGGCCAAGAGTGAGAACAGAAGCATAGTGCTAACTTCTCTCATCGACAATGGAATTGGAAGAGCCATCTATGGCCTCCCTCTACGCTTCAAAAACTCTTCTAACCGACATGTCACTGATTTTTCTACTCGTTTTTCATTCACTATCAATGTCTCCTCCAAAACCGACTATGGTGACGGTTTTGCCTTCTACGTCGCACCCCTTGCCTACCCGATTCCGTCGGATTCAGGTGGCGGCGGCCTCGGCCTTTACGGTGCCAACCAAGATAGCATCATTGCTGTTGAATTTGACACTTTTCCAAATGCTAATGTTGATCCACAAATGAGGCATGTGGGGATAAACAATAACACTTTGGTGTCTCTCAATTCTTCCTTTTTTGATATTGAGAGCAACATAGGGAACATGGGGCATGCGTTGATAACTTACAATGCTTCTGCCAAACTCCTTGCTTTCTGGTTTTCGTACCAGATTGACCTGGGGGAAATTCTCCCGGAGTGGGTCACTGTTGGGTTTTCGGGTGCAACCGGGGCGTCTAATGAGGAGAATGTTATTCATTCTTGGGAATTCACGTCAACTCTGAATTCCACACCGTTAAACAATAAAGAAAAGGATGGCAATAATGACAACATAGTTAAATACAAGTTTTCAGTCCAAGTAGTAGCTGTTGCAGTGAGTTGTTCTGTTTTGTTTATGCTCGTGGTTGCTGGAGTTTCTTGGTTTATCATCATCAAGAAGAGAAGAAGCGAAGATGGTTTTGGTTTCAATGGAGCAGCTATGCCTAGAAGGTTTGGTTATAACGAGTTAGTTGCAGCCACGAACGGGTTTGCAGATGATAGAAGGCTGGGAGAAGGAAGCACTGGACAAGTTTACAAAGGGTTTCTGAGTGATATAGGGAGCGTGGTTGCAGTGAAAAGGATATTTTCTGATGTTGAAGATTCGGAGAGAATATTCAGAAACGAGGTGAAGATTATAAGTGGTCTTGTGCATAAAAACCTGGTGCAATTGATGGGGTGGTGCAATGAGGAAGGAGAGTTGTTACTGGTTTTTGAGTACATGAGTAATGGAAGCCTTGACACTCATATATTTGGCAACAGGAGAACCTTGACATGGAGTGTGAGATACAATATAGTGTTAGGTGTGGCTAGGGCACTGCGTTATCTTCATGAAGAGGTGGAGCAGTGTGTTCTTCATAGAGACATAAAGTCAAGTAATGTTTTGTTAGACACAGATTTCAACACTAAGGTTAGTGACTTTGGGATAGCAAAGCTGGTGGATCCAAGGTTGAGGACTCAGAAGACAAGGGTGGTGGGGACATATGGGTACCTTGCACCTGAATATGTGAATGAAGGAAGGGCTAGCAAGGAGTCTGACATGTATGGTTTTGGGGTTGTGGCTTTGGAGATAGGTTGTGGAAAGAGGACTTACCGGGATGGAGAGTATAACCATGTGCCGTTGACAAATTGGGTGTGGAAAAAGTATGTGGATGGAAATATTTTTGATGCTGTAGATGAGGGATTGAAGAGAGATTATGACGTGGAAGAAATGAGATGTTTGCTCACTGTTGGAATATGGTGTACTCACCCGGATCACAGGCAAAGGCCAAAGGCAGAACAGGTTATTAATGCTCTAAAGCAAGAGACGCCATTGCCAATGCTTTCACTATAA 1857 0.4319 MPKYSFFSDIDSVVLPTMKSFHNFKTCFLFYIFLLLPITIAQPLSFNITNFNDTQTASLVGYAGVAKSENRSIVLTSLIDNGIGRAIYGLPLRFKNSSNRHVTDFSTRFSFTINVSSKTDYGDGFAFYVAPLAYPIPSDSGGGGLGLYGANQDSIIAVEFDTFPNANVDPQMRHVGINNNTLVSLNSSFFDIESNIGNMGHALITYNASAKLLAFWFSYQIDLGEILPEWVTVGFSGATGASNEENVIHSWEFTSTLNSTPLNNKEKDGNNDNIVKYKFSVQVVAVAVSCSVLFMLVVAGVSWFIIIKKRRSEDGFGFNGAAMPRRFGYNELVAATNGFADDRRLGEGSTGQVYKGFLSDIGSVVAVKRIFSDVEDSERIFRNEVKIISGLVHKNLVQLMGWCNEEGELLLVFEYMSNGSLDTHIFGNRRTLTWSVRYNIVLGVARALRYLHEEVEQCVLHRDIKSSNVLLDTDFNTKVSDFGIAKLVDPRLRTQKTRVVGTYGYLAPEYVNEGRASKESDMYGFGVVALEIGCGKRTYRDGEYNHVPLTNWVWKKYVDGNIFDAVDEGLKRDYDVEEMRCLLTVGIWCTHPDHRQRPKAEQVINALKQETPLPMLSL 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02761 618 SUPERFAMILY Protein kinase-like (PK-like) 323 607 IPR011009 -
Vimu1g02761 618 ProSitePatterns Protein kinases ATP-binding region signature. 345 368 IPR017441 GO:0005524
Vimu1g02761 618 FunFam L-type lectin-domain containing receptor kinase IX.1 324 415 - -
Vimu1g02761 618 Gene3D Transferase(Phosphotransferase) domain 1 416 616 - -
Vimu1g02761 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 459 471 IPR008271 GO:0004672|GO:0006468
Vimu1g02761 618 CDD lectin_legume_LecRK_Arcelin_ConA 44 257 IPR001220 GO:0030246
Vimu1g02761 618 ProSiteProfiles Protein kinase domain profile. 339 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02761 618 SUPERFAMILY Concanavalin A-like lectins/glucanases 42 262 IPR013320 -
Vimu1g02761 618 FunFam L-type lectin-domain containing receptor kinase IX.1 416 617 - -
Vimu1g02761 618 Gene3D Phosphorylase Kinase; domain 1 324 415 - -
Vimu1g02761 618 ProSitePatterns Legume lectins alpha-chain signature. 227 236 IPR000985 -
Vimu1g02761 618 Pfam Legume lectin domain 44 265 IPR001220 GO:0030246
Vimu1g02761 618 Pfam Protein kinase domain 340 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02761 618 Gene3D - 42 271 - -
Vimu1g02761 618 PANTHER - 64 610 - -
Vimu1g02761 618 ProSitePatterns Legume lectins beta-chain signature. 156 162 IPR019825 -
Vimu1g02761 618 SMART serkin_6 339 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02761 Vimu-Chr1 39860075 39861957 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02761 26 616 Receptor kinase-like Gene Family AT5G10530 40.924 1.29e-150 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vimu1g02761 Pkinase 6.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02761 - - gmx:100800327 894.419