Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02757 ATGGGAACAAATCTCAGCACTCCCAAAACTGAAAAGTCTTCCGATGATGGAGAAAATGATCATCTTAGATATGGTTTATCATCAATGCAAGGCTGGCGTGCATCAATGGAAGATGCACATGCTGCACATCTTGATCTGGATGAATCCACTTCCTTTTTTGGAGTTTATGATGGTCATGGAGGTAAGGTGGTTGCCAAGTTTTGTGCTAAGTATCTTCACCAACAGGTGGTCAAGAGTGAAGCATACATAGCTGGAGATATAGGAACCTCTCTTCGGGAATCATTTTTCAGGATGGATGAGATGATGCGTGGTCAAAGGGGCTGGAGGGAATTGGCAAGTTTGGGTGATAAGATAAACAAGTTCAATGTAATATGTCTTATGTATTGTAAGCAGGGTCCTCATTCTAATTTTGCTGGACCAACTTCAGGAAGCACTGCCTGTGTTGCAGTTATTAGAAACAACCAACTTTTTGTAGCAAATGCTGGTGATTCACGTTGTGTAATATGTAGGAAGGGTCAGGCATACGATTTGTCTATAGATCATAAACCTGATCTTGATACTGAGAAGGAAAGAATCATAAAAGCTGGTGGTTTTATTCATGCAGGAAGAGTTAATGGGAGTTTAAGCCTTGCAAGAGCTATAGGTGACATGGAGTTTAAGCAGAATAGATTCCTTCCTGCTGAAAAACAAATGGTGACAGCCAATCCAGACATAAATACTATTGAACTTTCAGATGAAGATGAATTTATAGTGCTAGCTTGTGATGGCATATGGGATTGCTTGTCAAGCCAGCAATTGGTTGATTTCGTACGTCAACAACTTCTCATTGAAACAAAACTTTCTGCGGTTTGTGAAAGAGTGCTGGATCGATGTTTGGCACCAACAATAGGTATTGGTGATGGATGTGATAACATGACCATGATTTTAGTGCAGTTAAAAAGACTGAGGCAGTCCAGTGCACCAACATAA 969 0.4045 MGTNLSTPKTEKSSDDGENDHLRYGLSSMQGWRASMEDAHAAHLDLDESTSFFGVYDGHGGKVVAKFCAKYLHQQVVKSEAYIAGDIGTSLRESFFRMDEMMRGQRGWRELASLGDKINKFNVICLMYCKQGPHSNFAGPTSGSTACVAVIRNNQLFVANAGDSRCVICRKGQAYDLSIDHKPDLDTEKERIIKAGGFIHAGRVNGSLSLARAIGDMEFKQNRFLPAEKQMVTANPDINTIELSDEDEFIVLACDGIWDCLSSQQLVDFVRQQLLIETKLSAVCERVLDRCLAPTIGIGDGCDNMTMILVQLKRLRQSSAPT 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02757 322 CDD PP2Cc 23 312 IPR001932 -
Vimu1g02757 322 MobiDBLite consensus disorder prediction 1 20 - -
Vimu1g02757 322 PANTHER PROTEIN PHOSPHATASE 2C 16 311 IPR015655 GO:0004722|GO:0006470
Vimu1g02757 322 ProSiteProfiles PPM-type phosphatase domain profile. 23 312 IPR001932 -
Vimu1g02757 322 FunFam probable protein phosphatase 2C 60 1 313 - -
Vimu1g02757 322 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Vimu1g02757 322 SMART PP2C_4 13 310 IPR001932 -
Vimu1g02757 322 Gene3D - 1 313 IPR036457 -
Vimu1g02757 322 Pfam Protein phosphatase 2C 23 294 IPR001932 -
Vimu1g02757 322 SUPERFAMILY PP2C-like 4 314 IPR036457 -
Vimu1g02757 322 SMART PP2C_SIG_2 28 312 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02757 Vimu-Chr1 39818555 39823273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02757 1 318 PP2C-type Phosphatase Gene Family AT2G25070 70.746 0.0 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02757 K17499 - gmx:100793667 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02757 1 39818555 39823273 Vimu1g02757 1 39818555 39823273 ECH
Vimu1g02757 1 39818555 39823273 Vimu10g03045 10 41349120 41354471 PCT