Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02754 ATGGCTGTTTTTTCTTCAGTTTCTTCATCTCTTTTGCTCACCTTCTTCCTCCTCTTCGGCCTCTCTGTAGCTAGGGAGATACTGGTTGGAGGTAAGACTGATGCTTGGAAGGTTCCAGCCTCTGAATCAGACGCACTTAACCAATGGGCCGAAAGGTCTCGTTTCCAAGTTGGCGACTTTCTTGTTTGGAAATATGATGGTGGGAAAGACTCAGTTTTGCAAGTGAGCAGAGAGGAGTATGTAAACTGCAGCATCTCAAACCCTATAAAGGTGTACAGTGATGGAACGACGAAGGTGAAGCTTGACCGTCCTGGGCCATTCTACTTCATCAGTGGGGCAAAGGGTCACTGTGAGAAGGGTCAGAAGCTTGTGGTGGTGGTTTTGACTCCAAGGGGAAGGTCCAGTGGCATTGTTTCTTCACCAGCACCTGCTCCTGCACCTTCTTTTGCTGAGTTTGAAGGTCCTGCTGTTGCGCCTACTAGCAGTGCGAATGCTTTGCATGGGGGCATTCTCATGGTGGCTCTGGTTGCTATGTCGGGACTTTTTATGTAA 552 0.4873 MAVFSSVSSSLLLTFFLLFGLSVAREILVGGKTDAWKVPASESDALNQWAERSRFQVGDFLVWKYDGGKDSVLQVSREEYVNCSISNPIKVYSDGTTKVKLDRPGPFYFISGAKGHCEKGQKLVVVVLTPRGRSSGIVSSPAPAPAPSFAEFEGPAVAPTSSANALHGGILMVALVAMSGLFM 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02754 183 SUPERFAMILY Cupredoxins 24 128 IPR008972 -
Vimu1g02754 183 Gene3D - 23 131 IPR008972 -
Vimu1g02754 183 Pfam Plastocyanin-like domain 36 121 IPR003245 GO:0009055
Vimu1g02754 183 CDD OsENODL1_like 25 128 IPR041846 -
Vimu1g02754 183 ProSiteProfiles Phytocyanin domain profile. 25 129 IPR003245 GO:0009055
Vimu1g02754 183 FunFam Early nodulin-like protein 1 24 132 - -
Vimu1g02754 183 PANTHER BLUE COPPER PROTEIN 26 145 IPR039391 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02754 Vimu-Chr1 39793748 39794701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02754 8 173 Phytocyanin Superfamily AT4G31840 54.386 3.40e-60 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02754 - - gmx:100527857 265.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02754 1 39793748 39794701 Vimu1g02754 1 39793748 39794701 ECH
Vimu1g02754 1 39793748 39794701 Vimu10g03042 10 41335553 41336524 PCT