Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02747 ATGGCATTGTTCCGCAAGTTCTTCTATAAGAAGCCCCCAGACGGGCTTCTAGAAATCACTGAAAGGGTTTATGGTACGCTTCCTGTTGCCTCATTTTCTCTGAACTCATTGGTTCTGGTGGAAGTGAAAAGTGTTGGTTTCTTCTCTGTGCAAATATATCATCCTTATGCATTTCGCCTTGGTGGGGGGTTGTGGTATGTAAGGCTTGTTAGCATATTTGAAGTGAATAATAGGAATATTATAACGTGTACATTGTTGGCTTCTGTTGAGTTCAAATGTTTCATCATTATGCATTGTGTTTGTGGTGGTTGGGTCTTTGATTACTGCTTTACCACGGATGTTATGGAAGAAGAAGAATATAGAGTGTATCTAGGAGGAATAATTGGGCAACTTCGTGGTCACTTCCCTGATGCTTCATTTATGGTGTTCAACATGAGGGAGGGAGACTGCCAAAGCCAGATTTCAAACATTTTGTGTGACTATGATATGACTGTGATAGACTATCCTCGACAGTATGAAGGGTGCCCATTGCTTACCATGGAGATGATCCATCATTTCTTGAGATCAGGTGAAAACTGGCTTGAACTTGGGCATCACAATGTTGTCTTGATGCATTGTGAACGAGGTGGGTGGCCGTTATTAGCATTTATGCTGGCTGCACTCTTGATTTATAGAAAGATGTTTACAGGGGAGCAAAAAACACTAGACATGATATACAAGCAAGCTCCTCGGGAACTTCTGCAGTTGATGTCACCATTGAATCCTTTACCTTCACAATTGAGATATCTTCAGTACATATCAAGAAGAAATGTTGGTTCAGAATGGCCTCCTCTTGATAGGGCACTTACTTTGGACTGTGTAATTATAAGACTTATTCCTAACATGGGTGGAGAGGGTGGCTGCCGTCCTATATTTAGAATATATGGGCAAGACCCTTTTATTCCTGCAGATCGAACTCCCAAAGTTCTCTTCTCAACTCCAAAAAGGAGCAAACTTGTTCGCTACTGTAGGCAGGTGTCTGACTGTGAACTGGTTAAGATTGACATCCACTGTCATGTTCAAGGTGATGTCGTTTTTGAGTGTATTCATCTGCACAGTGATTTAGAGCATGAAGAAATGATGTTTCGGGTGATGTTTAATACAGCATTCATAAGATCAAATATTTTGATGCTTAACCGTGATGAAATTGACATACTATGGAATGCTAAAGATTGCTTCCCTAAGAATTTTAGAGTGGAGGTTCTTTTCTCAGATATGGATGCTTCAACTTCTGTTATTTCAATTGATCTGCCTCATGTTGAGGAGAAAGATGGCCTCCCTGTCGAAGCATTTGCAAAGGTCAAGGAGATTTTCAGCCATGTGGATTGGCTAGATTCAAGGGAAGAAGTAGCAAGTGTGCTCCAACATATCACATCTTCAAATATCCTTCTGGAAAGATTTGACTCTGGGGTTTCTGCTGCAACAAGTGACTTGCAAAAGGAGTCATCTGAAAAGTCTACAGCTGTTTTGAAGGCATACAGTGATACAAACATTCAAACTTCTGCAGTTCAGGGGAAACATTCTACATCCTCATTAGGATCGTCTTTGGATTTGGCTATGGGAAATAAGACTGAACCATTAGAGTCAAAGACATTGTCCAAAAATGACATTGAGACTCTTGAATGTTCAGGTCAAGGGAACCAACCTATTCACTCATTTGGGCTTTCAAAAGATTCAGATTCTACTAAAAGGGGGACTGAGTCATTAGAATCCAAGGAGAAGGATATTGAGTCATTAGCATCCACTGATGCAGATTCATTGGCAAAGAAGACTGATTTGTTAGGATCAAAGGAGAAAACATTTGAGTCACTCAACTCCGAGGCATTTTTGGAAAATGATAGCAGATTCAAATATGAACCTAGGCCACTTGCAGAAATTGATAACTCATCTGGTAGTGCTCCTATGGAAAAGAACAATGACCCTCTAGAATTAAAGGTATCACCAGAAAATACCCTCAAGACTTCTGCTTCCACGAGTCAGGGGAAACGGCTTACTCCCTCATTTGGACTCATAACAGATTCTAGTTCTCCTGAAAAGCCAGTTGAATCATTAGACAATGCCAAGGTTCCAACATCTATGCCTCGTGTGGCGAAGTCTATGCCCTCAATTGAACCATATAAGGATGCATATTCAATGACACAGGACATAGGACCATTAGAAACAAAGTCATTAACGGATGGAAATTCAATAAAAGAGAAAATAGGGCAATTAGAGCAAATCGTATTGTCAGAAAATGATACCAAGAGTGTCACATCCACAGCTCAAGGGAAACAATATAGTCCTTTACTTGAACAGCCTGTTGAAGCAAGCACAATTAAAACGAAAATTGAACCTCATGAATTGCAGGTTTCCCTCCAGCTTCCCACTCAATCAAAAATAATTTCTTCACCGGTGCGTCCAGCTGTCCGATCTGCTTCTGCTTCCACTTCTTATTTTAACTCCTTAAAAGGTTCACCTGTAGCTATCTCAAGATATCGTAGTGCACCATCAGCTCTTGGAATAACATCTGTGTTGCAGGATCATGCAGCAGTGGATACCAAAGAAGTAACTCATGCAGTCACAGTATCTCCTCCAGCTTCTGTGTTGCCTCCTTCAGACTCCAAGGTGTTAAATTCTGTAGAGCCTAGTCCTGCAGCTGTTCCTCCAGCATCGTCATCACCTTTGCTTCCATCTTTACCGTTAAAAACTTCAGTTGATGCTCTTAAAACCACGGAAAAGACTTTTGAATCCCTTTCTCCTGCAGCTGTAACTACACCACCACCTCCACCACCACCACCACCATCTTCTCAATGTGATCACACTTCAAATTTGATGCAATCTAATGCTACTCAGTACCCTGAGAATACAAATGAAGGTAAGAAACCATTGGTTGGTCCTCCTCCTCCTCCCCCATCCCCTTCAATGCTCGCTCCTCCAACCCCTTCCCTTCCTGAAACATCAGTTTCCACAACCCAAGATTCATGTAAAGGTCCTCCTGCACCACCACCTCCACTGTCTGGATTTCCTTCTTCGTTGGGTATAAATGAATCAGTTGCTATACCTGGCCCTCCTCCTCCTCCCCCGCCTCCACCTCCTAGCCTTTCAAGTTCTGCACCACCATCAGCACCACCACCACCACCCCCTCCTTCCACTTCTGCATTCCAAAATTCTTTGTCTGAGAACTCCAAAAATGGTCCTCCTGTACCCCCACCTCCACCTCCTAGCCTTCCTGGTTCAACTCTATCACCTTCAGCGCCACCACCACCCCCTCCTCCAGGTTCTGCATCCCAAAATTCTCTGTCTAGCTCCACAAATGTTCCACCTGTACCCCCACCTCCCCTTTCTGCCAATGGATTGTCAAAACCTGGAGTTCCTGGACCACCTTCTGTTCCTGGACCACCTTCTGCTCCTGGACCACCTTCTGCTCCTTTTGATGCAAAGGGTCGTGGCCTGATGCGAGCTAATGCAAAATTTCAGTCTAAGAGGAGCAATCTGAAACCTTACCATTGGCTAAAATTAACAAGGGCGATGCAAGGAAGCTTATGGGCTGAGACACAGAAACTAGATGAATTTTGTAGGGCTCCAGAGTTTGACATGTCAGAACTTGAAACTTTGTTCTCCGCAGCTTCTCCAGCTGCTACTGATGGAAAAGGAGGAAAGTTAAATCGCCGTGCCGCTGGGCAAAAAGTTGAGAAAGTTCAACTGATTGAGCTCAGGCGGGCCTATAACTGTGAGATCATGCTTACAAAAGTCAAAATTCCTTTGCCTGACTTGATGGTTTGTCTTTGTGCTTCTCACGTTTCTCCTCTCTCATCTCTCCTCTCTCATCTTGTGCACGCCTCTGTTCTCTGCGTTTGTGTGACTCACATTTGCAATGTGTCTCACATTCCAGCCATTGTCTTTCAGAGTGCTGTGCTTGCAATGGATGATACAGTATTAGATATCGATCAAATTGAGAACCTCATAAAATTCTCTCCAACCAAAGAAGAGATGGAAACACTCAAGAACTATGCCGGGAATAAGGACAACTTGGGAAAGTGTGAGCAGTTCTTCTTAGAATTGATGAAAGTGCCAAGAGTGGAAAGCAAGCTAAGAGTTTTTTCTTTTAAGATGCAATTCCTGTCCCAGGTTTCAGAGCTTAAAAGAGATTTGAATATTGTGAATTCTGCATCTGAAGAGATAAGGAATTCAGTCAAGTTGAAAAGAATCATGCAGACTATTCTTTCTCTGGGTAATGCTTTGAACCATGGAACTGCAAGAGGTGCGGCTGTTGGGTTTCGATTGGATAGTCTCCTTAAACTGACTGATACACGATCAAGAAACAACAAGATGACTCTTATGCATTATCTCTGTAAGGTGCTTGCTGAAAAACTAGGAGAACTTCTCGATTTCCATAAAGACTTAGTGAGTTTGGAGGCGGCAAGCAAGATACAATTAAAATACTTGGCAGAGGAAATGCAAGCTATTAGTAAAGGACTGGAGAAAGTAGTTCAGGAATTGACTGCATCAGAGAATGATGGACTTGTGTCAGAATACTTCTGCCAGATTCTGAAGGAATTTCTTTCTTATGCTGAATCTGAAGTAAGGTCTTTGGCTCAACTTTATGCCAACGTGGGTAGAAATGCAGATGCATTGGCTTTATACTTTGGTGAAGATCCAGCACGTTGTCCATTTGAACAAGTTGTATCTACGCTACTCAACTTTGTGAGGTTGTTCGTAAAAGCACATGAGGAAAATTGCAAGCAGATTGAACTAGAGAGAAAAAGAGCAGAGAAGGAAGCAGAGAATGAGAAGTTGAAGCTAGCTGCTGCCAAGAAGGAGTCTGAACAGATGATGAGGACCACTATAAAGAGTGGGGATATTAAATAA 4887 0.4254 MALFRKFFYKKPPDGLLEITERVYGTLPVASFSLNSLVLVEVKSVGFFSVQIYHPYAFRLGGGLWYVRLVSIFEVNNRNIITCTLLASVEFKCFIIMHCVCGGWVFDYCFTTDVMEEEEYRVYLGGIIGQLRGHFPDASFMVFNMREGDCQSQISNILCDYDMTVIDYPRQYEGCPLLTMEMIHHFLRSGENWLELGHHNVVLMHCERGGWPLLAFMLAALLIYRKMFTGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYISRRNVGSEWPPLDRALTLDCVIIRLIPNMGGEGGCRPIFRIYGQDPFIPADRTPKVLFSTPKRSKLVRYCRQVSDCELVKIDIHCHVQGDVVFECIHLHSDLEHEEMMFRVMFNTAFIRSNILMLNRDEIDILWNAKDCFPKNFRVEVLFSDMDASTSVISIDLPHVEEKDGLPVEAFAKVKEIFSHVDWLDSREEVASVLQHITSSNILLERFDSGVSAATSDLQKESSEKSTAVLKAYSDTNIQTSAVQGKHSTSSLGSSLDLAMGNKTEPLESKTLSKNDIETLECSGQGNQPIHSFGLSKDSDSTKRGTESLESKEKDIESLASTDADSLAKKTDLLGSKEKTFESLNSEAFLENDSRFKYEPRPLAEIDNSSGSAPMEKNNDPLELKVSPENTLKTSASTSQGKRLTPSFGLITDSSSPEKPVESLDNAKVPTSMPRVAKSMPSIEPYKDAYSMTQDIGPLETKSLTDGNSIKEKIGQLEQIVLSENDTKSVTSTAQGKQYSPLLEQPVEASTIKTKIEPHELQVSLQLPTQSKIISSPVRPAVRSASASTSYFNSLKGSPVAISRYRSAPSALGITSVLQDHAAVDTKEVTHAVTVSPPASVLPPSDSKVLNSVEPSPAAVPPASSSPLLPSLPLKTSVDALKTTEKTFESLSPAAVTTPPPPPPPPPSSQCDHTSNLMQSNATQYPENTNEGKKPLVGPPPPPPSPSMLAPPTPSLPETSVSTTQDSCKGPPAPPPPLSGFPSSLGINESVAIPGPPPPPPPPPPSLSSSAPPSAPPPPPPPSTSAFQNSLSENSKNGPPVPPPPPPSLPGSTLSPSAPPPPPPPGSASQNSLSSSTNVPPVPPPPLSANGLSKPGVPGPPSVPGPPSAPGPPSAPFDAKGRGLMRANAKFQSKRSNLKPYHWLKLTRAMQGSLWAETQKLDEFCRAPEFDMSELETLFSAASPAATDGKGGKLNRRAAGQKVEKVQLIELRRAYNCEIMLTKVKIPLPDLMVCLCASHVSPLSSLLSHLVHASVLCVCVTHICNVSHIPAIVFQSAVLAMDDTVLDIDQIENLIKFSPTKEEMETLKNYAGNKDNLGKCEQFFLELMKVPRVESKLRVFSFKMQFLSQVSELKRDLNIVNSASEEIRNSVKLKRIMQTILSLGNALNHGTARGAAVGFRLDSLLKLTDTRSRNNKMTLMHYLCKVLAEKLGELLDFHKDLVSLEAASKIQLKYLAEEMQAISKGLEKVVQELTASENDGLVSEYFCQILKEFLSYAESEVRSLAQLYANVGRNADALALYFGEDPARCPFEQVVSTLLNFVRLFVKAHEENCKQIELERKRAEKEAENEKLKLAAAKKESEQMMRTTIKSGDIK 1628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02747 1628 SMART it6_source 535 1626 IPR015425 -
Vimu1g02747 1628 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1237 1604 - -
Vimu1g02747 1628 SMART PTEN_C2_2 277 418 IPR014020 -
Vimu1g02747 1628 MobiDBLite consensus disorder prediction 554 569 - -
Vimu1g02747 1628 MobiDBLite consensus disorder prediction 968 986 - -
Vimu1g02747 1628 ProSiteProfiles C2 tensin-type domain profile. 279 419 IPR014020 -
Vimu1g02747 1628 MobiDBLite consensus disorder prediction 657 694 - -
Vimu1g02747 1628 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 281 419 IPR035892 -
Vimu1g02747 1628 Gene3D - 276 422 - -
Vimu1g02747 1628 Gene3D Protein tyrosine phosphatase superfamily 79 271 IPR029021 -
Vimu1g02747 1628 Pfam C2 domain of PTEN tumour-suppressor protein 280 417 IPR014020 -
Vimu1g02747 1628 Gene3D Formin, FH2 domain 1180 1619 IPR042201 -
Vimu1g02747 1628 MobiDBLite consensus disorder prediction 1070 1101 - -
Vimu1g02747 1628 Pfam Formin Homology 2 Domain 1166 1272 IPR015425 -
Vimu1g02747 1628 Pfam Formin Homology 2 Domain 1301 1578 IPR015425 -
Vimu1g02747 1628 PANTHER FORMIN-J 684 1615 - -
Vimu1g02747 1628 MobiDBLite consensus disorder prediction 1111 1147 - -
Vimu1g02747 1628 Coils Coil 1579 1620 - -
Vimu1g02747 1628 MobiDBLite consensus disorder prediction 637 713 - -
Vimu1g02747 1628 MobiDBLite consensus disorder prediction 1025 1058 - -
Vimu1g02747 1628 MobiDBLite consensus disorder prediction 928 943 - -
Vimu1g02747 1628 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1161 1604 IPR015425 -
Vimu1g02747 1628 MobiDBLite consensus disorder prediction 554 597 - -
Vimu1g02747 1628 MobiDBLite consensus disorder prediction 570 593 - -
Vimu1g02747 1628 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 154 267 IPR029021 -
Vimu1g02747 1628 MobiDBLite consensus disorder prediction 868 904 - -
Vimu1g02747 1628 MobiDBLite consensus disorder prediction 944 963 - -
Vimu1g02747 1628 MobiDBLite consensus disorder prediction 922 1154 - -
Vimu1g02747 1628 MobiDBLite consensus disorder prediction 987 1001 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02747 Vimu-Chr1 39684656 39706982 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02747 1138 1606 FH2 protein (formin) Gene Family AT3G32400 64.681 0.0 600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02747 - - vum:124835422 2468.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02747 1 39684656 39706982 Vimu1g02747 1 39684656 39706982 ECH