Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02746 ATGCTCGTTCAAGTCCTCAACACAGCAGTCATAATGGATGTAAAGGTGGAAAGTCTTAAATCTGAGTTAAAGAGAGTGAGAGAGGAGAATAAAACTCTAAGAGTGATGTTTGAAGTTCTAAGCAGCAAGTACACAAAGCTTGAGTCCCATCTTCAAGAGATAAACAAGGAACAACACAAGGGCATGAGTTCAAATCAAACAGGATCAGTAACCGAACCTATCTTGGATGTGTACAAGAGACGGAGACTAGAGTTTCACACAGCAAAAAAACCACTACAAATCTTTGTCAGAACACACCCCATGGATGATAGTTTGATAGTAAAAGATGGATATCAGTGGAGAAAGTATGGACAAAAGGTCACCAAAGACAATGCTTCACCAAGAGCTTACTTTAGGTGCTCCATGGCTCCCATTTGCCCAGCCAAAAAGAAGGTGCAAAGATGTTTACATGATAAGTCTATCCTTGTTGCAACTTATGATGGAGAGCACAACCATGGTGCTCTTCATGAGCCATCTTCATCCACACCTAGAGGGTCATCAGTGGCCAACCAGTTGCCTAGCATAGCAAATGACAAAGAAGCAATGAGCATTTTGGCTCTTTCTGGATTGTCTCAAACAGATAGAAGGCATGGTGAAGAAGTAATGCATCAACATGACTATGACACCAACATCAAAGTTGAAGAATATGTAAGTTCTCTAATCAAGGATCCTGAGTTCACCATGTCATTAGCTGAAGCAGTTGCCCGCACCATCACTGGCGAGCTCAAGCAGCAAGATATAAACCTCAATTTGAATATTCCGGAAGAGTGA 810 0.416 MLVQVLNTAVIMDVKVESLKSELKRVREENKTLRVMFEVLSSKYTKLESHLQEINKEQHKGMSSNQTGSVTEPILDVYKRRRLEFHTAKKPLQIFVRTHPMDDSLIVKDGYQWRKYGQKVTKDNASPRAYFRCSMAPICPAKKKVQRCLHDKSILVATYDGEHNHGALHEPSSSTPRGSSVANQLPSIANDKEAMSILALSGLSQTDRRHGEEVMHQHDYDTNIKVEEYVSSLIKDPEFTMSLAEAVARTITGELKQQDINLNLNIPEE 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02746 269 Pfam WRKY DNA -binding domain 108 165 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g02746 269 SUPERFAMILY WRKY DNA-binding domain 101 166 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu1g02746 269 SMART WRKY_cls 107 167 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g02746 269 ProSiteProfiles WRKY domain profile. 102 168 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g02746 269 Coils Coil 9 57 - -
Vimu1g02746 269 Gene3D WRKY domain 93 167 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu1g02746 269 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 16 254 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02746 Vimu-Chr1 39681711 39683345 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02746 1 259 WRKY Transcription Factor Family AT1G80840 35.395 1.47e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu1g02746 WRKY 2.6e-22 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02746 1 39681711 39683345 Vimu10g03031 10 41230216 41231469 PCT