Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02743 ATGGAACCAACATGCTTGGATACTTCACTCAATCTCAACGTTGATCCTTCTTCTGTTCACACGGATATGGTGTTGGAGGAAGAGTTGCAGAGGCTGAGACGTGAGAACAAGAGGTTGACTGAGATGTTGACCCACTTGTGTGACAGCTACATGGTTTTGCAGAAGACCCAATTGACCCAATTGAAGAACGCAAATTTTGAGCAAGACCAGCTCGAATCACGCAAGAGAAAAGCAGAGAACGAATGTTGTACCAACAAATTCGGTGTTGTTAACAACAACAGTGGTGAGTGCAGCTCCATAACAGAGGATTCCTTCAAAAGGTACAAGGATTTCAGCTCCTCCCCAAAGGTTTCCAAGGTTCTTGTAAAGACAGAAGCTTCTAATAACAGTTTATATGTGATGGATGGATATCAATGGAGGAAATACGGTCAAAAGGTGACCAGAGATAACCCTTCTCCTAGAGCTTATTTCAGGTGCTCCTTTGCTCCAAGCTGCCCTGTTAAAAAGAAGGTGCAAAGGAGTTTAGAAGACCCTACAATACTTGTTACAACATATGAAGGAGAGCATAATCATGGTAATAAAAGAGGTGAAATTGAAGGAGGAAAAGGGTCAAGTCCAGTTTGTTCACCAACAGCCACAATTGGAAGTGTAACGCTTGATTTGGTCAAATCAGGATTGTTTGAAACTGCCCAAAAGTCATCTATCCAACAATTTTTGGTTCAACAAATGGCTACTTCTTTGACAAGGGATCCCAATTTCACCACAGCACTTGCCACTGCCATTTCAGGAAAAATTCTACACGCCAAATGGTGA 813 0.4219 MEPTCLDTSLNLNVDPSSVHTDMVLEEELQRLRRENKRLTEMLTHLCDSYMVLQKTQLTQLKNANFEQDQLESRKRKAENECCTNKFGVVNNNSGECSSITEDSFKRYKDFSSSPKVSKVLVKTEASNNSLYVMDGYQWRKYGQKVTRDNPSPRAYFRCSFAPSCPVKKKVQRSLEDPTILVTTYEGEHNHGNKRGEIEGGKGSSPVCSPTATIGSVTLDLVKSGLFETAQKSSIQQFLVQQMATSLTRDPNFTTALATAISGKILHAKW 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02743 270 SUPERFAMILY WRKY DNA-binding domain 131 192 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu1g02743 270 Coils Coil 22 49 - -
Vimu1g02743 270 Gene3D WRKY domain 116 193 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu1g02743 270 Pfam WRKY DNA -binding domain 135 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g02743 270 Coils Coil 61 81 - -
Vimu1g02743 270 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 23 265 IPR044810 GO:0003700
Vimu1g02743 270 FunFam WRKY transcription factor 40 118 195 - -
Vimu1g02743 270 SMART WRKY_cls 133 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g02743 270 ProSiteProfiles WRKY domain profile. 128 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02743 Vimu-Chr1 39659777 39660952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02743 6 265 WRKY Transcription Factor Family AT1G80840 44.599 8.22e-71 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu1g02743 WRKY 4.9e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02743 - - gmx:100810978 390.193