Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02717 ATGGCAAATTCAGCTATGGGTATGCTAGCTCCCCTGGCAAGAGATCTTCAATGGAAGATTTTTATGAGACAAAAATTGATGGCGTTGATGGTGAAATTGTTGGCCTTTTTGGAGTTTTTGATGGTATTTTTACATAATACTTTTATCGCCTTAGCCTTGTATTGTATCCATGCTACTTATGCTAAGAGAAAATTCCAAGATGGCGGAGTAGCTAATATGATAAAAAGTGATTATTTCAATCTGACTATGCAATGTTTAGTTCTTATGATTGGCTATGGTCATGGAGGTGCTCGTGCTGCCGAGTATGTCAAGCAAAACCTGTTTAGCAATTTGATCAGACATCCAAAATTCATTTCTGACACCAAATCTGCAATAGCTGATGCATATAACCATACCGACTCTGAATTTCTGAAATCTGAAAATAATCAAAACAGAGATGCTGGATCAACTGCTTCCACTGCCATTCTTGTCGGAGACCGTTTGCTTGTTGCAAATGTTGGGGACTCCAGAGCTGTTATATGCAGGGGTGGAAATGCCATTGCTGTTTCCCGAGATCACAAGCCGGACCAAACTGATGAGAGGCGAAGGATTGAAGATGCAGGTGGCTTTGTTATGTGGGCTGGAACTTGGAGAGTTGGTGGCGTTCTTGCTGTTTCTCGTGCATTTGGCGATAGACTCCTGAAGCAGTATGTTGTTGCTGATCCAGAAATCCAGGAAGAAAAGGTTGATAGCTCTCTTGAGTTTCTCATATTGGCCAGTGATGGGCTATGGGATGTTGTCTCAAACGAGGAAGCTGTTTCCATGATTAAACCGATTCAGGACGCGGAGGAGGCAGCAAATAGACTGATGCAAGAAGCATACCAGAGAGGTAGTTCTGACAACATTACATGCGTGGTTGTTCGTTTCTTGTCGAACCAAGGTGCTTCTTCTCACAGTAACTCTGGCTAA 948 0.4262 MANSAMGMLAPLARDLQWKIFMRQKLMALMVKLLAFLEFLMVFLHNTFIALALYCIHATYAKRKFQDGGVANMIKSDYFNLTMQCLVLMIGYGHGGARAAEYVKQNLFSNLIRHPKFISDTKSAIADAYNHTDSEFLKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERRRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKVDSSLEFLILASDGLWDVVSNEEAVSMIKPIQDAEEAANRLMQEAYQRGSSDNITCVVVRFLSNQGASSHSNSG 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02717 315 CDD PP2Cc 93 302 IPR001932 -
Vimu1g02717 315 ProSiteProfiles PPM-type phosphatase domain profile. 67 302 IPR001932 -
Vimu1g02717 315 SUPERFAMILY PP2C-like 83 302 IPR036457 -
Vimu1g02717 315 Gene3D - 62 314 IPR036457 -
Vimu1g02717 315 PANTHER PROTEIN PHOSPHATASE 90 301 IPR015655 GO:0004722|GO:0006470
Vimu1g02717 315 Pfam Protein phosphatase 2C 91 295 IPR001932 -
Vimu1g02717 315 SMART PP2C_SIG_2 65 302 IPR001932 -
Vimu1g02717 315 SMART PP2C_4 46 300 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02717 Vimu-Chr1 39200352 39203567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02717 93 314 PP2C-type Phosphatase Gene Family AT4G31750 90.090 1.63e-146 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02717 K17506 - gmx:100795017 434.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02717 1 39200352 39203567 Vimu1g02717 1 39200352 39203567 ECH
Vimu10g03126 10 41978836 41980262 Vimu1g02717 1 39200352 39203567 ECH