Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02711 ATGGAATCGGAGGATTTGGTGAAACAAGAATTGGAGGAATTGCTGAAACAATTGGGGAAGAAGCAAAGGTTTGAAGCCTCTGTTTTGGCCCTCAAATCCCTTCTCCAAAGCTCATATCCTTCAGCTTCTCCATCGCTTCGCCAATCCGAGCTAAAAGGCAGGAGATTGACTGTTGTTGCTGGTGTTGGCAGTTTTATTCAGTTATTTGCCGAATATACAGCACCAGGTTTCTGGAATGCTGGACTGGGACTTTTTGAGCTGGCATATTTGCTTGTTTCTGAACCTTCTGAGAAGGAACACTTGAAGGCTTGCATTGCTCAGGCCAGGGAACATTTGCATCTGGAAGACAATCCATCACTACAAGCTTCACAACTTGCAGATAATCAAGCACACAGAGGATACCTTTTTGAGGGGCACCTTACGGTTGATCCTGAACCCCCACAACCTCAATGGTTGGTGCAGTCAAACCTCTTGACAACAGCTGCTACACTCTTTGCTGCCGAATCTTCCCAAGCTTCTGCAGAAAATGGAACCACCCAAGAGGATGCAGCCAATATTCTTCAAGATCTTATAAATAGATTGGAAGAAGTTGTGCCCTTGATGGTGGATGAAGGTACTGTAGCCCCGAGAGCCCCTCCTGCCAGTAAAGAGGTTGTGGCAAAACTTCCAGTCATCACTCTCACAGAGGAAATTCTGGCTACTTTGGGGAAAGATGCAGAGTGTGCCATTTGCAGGGAGAACTTAATTTTAAATGACAAAATGCAAGAGTTGCCATGCAAACACACATTCCACCCACCATGTCTAAAGCCATGGCTGGATGAGCACAATTCTTGTCCCATCTGTCGGTATGAGCTGCAAACTGATGATCATGCCTATGAAAGCTGGAAGGAGCGAGAAAAGGAAGCTGAAGAGGAGAGAAAAGGTGCTGAAAATGCAATTCGAGGTGTTGTTGTATTCTTTATTATTTTGCGCTATAGATATCTCAAGTTTTCAGGGCTGCTCAAGGTTTTGATGATAGTTCATGATTAA 1029 0.447 MESEDLVKQELEELLKQLGKKQRFEASVLALKSLLQSSYPSASPSLRQSELKGRRLTVVAGVGSFIQLFAEYTAPGFWNAGLGLFELAYLLVSEPSEKEHLKACIAQAREHLHLEDNPSLQASQLADNQAHRGYLFEGHLTVDPEPPQPQWLVQSNLLTTAATLFAAESSQASAENGTTQEDAANILQDLINRLEEVVPLMVDEGTVAPRAPPASKEVVAKLPVITLTEEILATLGKDAECAICRENLILNDKMQELPCKHTFHPPCLKPWLDEHNSCPICRYELQTDDHAYESWKEREKEAEEERKGAENAIRGVVVFFIILRYRYLKFSGLLKVLMIVHD 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02711 342 SMART ring_2 241 281 IPR001841 -
Vimu1g02711 342 Pfam Ring finger domain 240 282 IPR001841 -
Vimu1g02711 342 Coils Coil 292 312 - -
Vimu1g02711 342 SUPERFAMILY RING/U-box 235 288 - -
Vimu1g02711 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 288 IPR013083 -
Vimu1g02711 342 ProSiteProfiles Zinc finger RING-type profile. 241 282 IPR001841 -
Vimu1g02711 342 FunFam E3 ubiquitin-protein ligase RNF181 202 288 - -
Vimu1g02711 342 Coils Coil 1 21 - -
Vimu1g02711 342 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 147 285 - -
Vimu1g02711 342 CDD RING-H2_RNF126-like 240 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02711 Vimu-Chr1 39122240 39125131 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02711 7 321 C3H Transcription Factor Family AT5G20910 59.048 5.30e-118 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02711 K16274 - gmx:100800189 475.707