Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02700 ATGGTGAAACCGGCCATTACCAGAGTTGATTCTTCTTCTTCTTCCTCTTCTTCTCCCACTTCTTGCAATGACGCATTCTCCACCAACAATTCCAGTGCCGCCTGCAAGATGTACAAAGGAGTGAGGAAGAGAAAATGGGGGAAATGGGTGTCTGAAATTCGGCTTCCAAACAGCCGTGAGCGTATATGGTTGGGCTCTTACGACACGCAAGAGAAGGCAGCAAGAGCCTTTGATGCTGCTCTCTATTGCCTGCGTGGGAAGGGTGCCAGTTTCAACTTCCCCGACACGCCTCATCTCTTCGAAATGGAGTCGCTCAAGATACCCTGCAGCCACCAAGAGATCCAGGAGGTGGCGGCCAAGTTTGCTAACAAGGTGGTGGAGATTTTGGCGGAAGAAGAAGAAGAAGATGGAGAAGTTGGAGTTCAGAGTGAGTCTATGTCTGACCACACCACACACACAGAAACAAACAGGAGCTTTCCTATTTATGATGGTGGGACAAACAATGATGTCGGAGTGGACCAAGACACCATGGATTGGACATTTATGAACATGTTGGATGACTTGAATGGCTCCGATTTCGGCCTCTATTTTGAAGCAGAGAAGGGTGAGTTTTTGTGCCCCACAACACACACTCCACTACTCTTTCACAATGGAGATGAGATTGAAGTTGATGATCATGATCATGATGCTTTTTCTAACCACTCTTTTCTTTGGAGTTGGAACTTTTGA 729 0.4705 MVKPAITRVDSSSSSSSSPTSCNDAFSTNNSSAACKMYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTQEKAARAFDAALYCLRGKGASFNFPDTPHLFEMESLKIPCSHQEIQEVAAKFANKVVEILAEEEEEDGEVGVQSESMSDHTTHTETNRSFPIYDGGTNNDVGVDQDTMDWTFMNMLDDLNGSDFGLYFEAEKGEFLCPTTHTPLLFHNGDEIEVDDHDHDAFSNHSFLWSWNF 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02700 242 CDD AP2 38 96 IPR001471 GO:0003700|GO:0006355
Vimu1g02700 242 MobiDBLite consensus disorder prediction 132 164 - -
Vimu1g02700 242 SUPERFAMILY DNA-binding domain 37 95 IPR016177 GO:0003677
Vimu1g02700 242 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
Vimu1g02700 242 Pfam AP2 domain 38 86 IPR001471 GO:0003700|GO:0006355
Vimu1g02700 242 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Vimu1g02700 242 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 192 - -
Vimu1g02700 242 Gene3D AP2/ERF domain 36 95 IPR036955 GO:0003700|GO:0006355
Vimu1g02700 242 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Vimu1g02700 242 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Vimu1g02700 242 FunFam Ethylene-responsive transcription factor 2 36 95 - -
Vimu1g02700 242 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 35 - -
Vimu1g02700 242 MobiDBLite consensus disorder prediction 1 25 - -
Vimu1g02700 242 MobiDBLite consensus disorder prediction 7 25 - -
Vimu1g02700 242 MobiDBLite consensus disorder prediction 143 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02700 Vimu-Chr1 38968437 38969748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02700 30 151 AP2-EREBP Transcription Factor Family AT1G19210 59.016 1.41e-40 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu1g02700 AP2 6.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02700 - - vum:124843463 473.781