Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02692 ATGAGTTCTAGAAGACAAGGAATCTCCCACAACTTTTCTCTAGGTGAATCAGAAGTAGCTTGTGGAAGAAAGTTACAGAGCAGGGTTGTTGCAGTTTCACACATAGACCAAATGAGTACTAAAAGGAACACATGGAAGTCTGTGATCTTGATCTTAGGTTGTTACAAGGTTAAGTGTCCCCTGGAGGAATCAGAAAAACAGGTTTTGAAACAAGGGTCTTTCCAGAGGCTGTGTCTATCTGATGTGAGCATTTCAAGCTCCACTCAGGCCATTGAAGATCTTTCAATTTCCTTTGCTGGCTCCAAACTTTATGCATTTACACTTGAGGAGTTAAGGGAAGCAACAAACAGTTTCTCATGGAGTAATATGCTAGGAGAAGGAGGGTTTGGACCTGTGTACAAGGGTTTTGTGGATGACAAACTTAGGCCAGGTTTGAAGGCTCAGACTGTTGCTGTGAAAAGGTTGGACTTGGATGGCTTGCAGGGTCACAGGGAGTGGCTGGTTAATTCTTTTGCTGTGGTACAAACAGAATACTCTGCTGCTATGCCATGGTCAACCAGGATGAAAATTGCATTAGGAGCTGCCAAAGGTCTGGTCTTCCTTCATGAATCAGATAAGCCTGTAATATACCGCGATTTCAAAGCTTCAAACATTTTACTAGACTCAGATTTCACAGCTAAACTCTCAGACTTTGGTCTCGCCAAGGATGGCCCTGAAGGGGAAGACACATATGTAACAACACGGATAATGGGAACACAAGGATACGCTGCTCCTGAGTACATAATGACAGGAGCCATGAAAGTTGCTATGTTGGCTTTCAAATGCTTGAGTCCTCACCCAAATGCAAGGCCAACTATGAGTGATGTGGTGAAGGTATTGGAGCCACTTCAGGACTTTGATGATGTTTTCATTGGACCCTTTGTGTATGTTGCCGTTAGTGAAAATGGTAACAAACATAAAATATAG 966 0.4296 MSSRRQGISHNFSLGESEVACGRKLQSRVVAVSHIDQMSTKRNTWKSVILILGCYKVKCPLEESEKQVLKQGSFQRLCLSDVSISSSTQAIEDLSISFAGSKLYAFTLEELREATNSFSWSNMLGEGGFGPVYKGFVDDKLRPGLKAQTVAVKRLDLDGLQGHREWLVNSFAVVQTEYSAAMPWSTRMKIALGAAKGLVFLHESDKPVIYRDFKASNILLDSDFTAKLSDFGLAKDGPEGEDTYVTTRIMGTQGYAAPEYIMTGAMKVAMLAFKCLSPHPNARPTMSDVVKVLEPLQDFDDVFIGPFVYVAVSENGNKHKI 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02692 321 SUPERFAMILY Protein kinase-like (PK-like) 95 294 IPR011009 -
Vimu1g02692 321 Pfam Protein kinase domain 185 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02692 321 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Vimu1g02692 321 Gene3D Transferase(Phosphotransferase) domain 1 174 269 - -
Vimu1g02692 321 PANTHER OS01G0588500 PROTEIN-RELATED 264 297 - -
Vimu1g02692 321 ProSiteProfiles Protein kinase domain profile. 63 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02692 321 Gene3D Phosphorylase Kinase; domain 1 79 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02692 Vimu-Chr1 38846914 38849082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02692 97 268 Receptor kinase-like Gene Family AT4G02010 39.450 2.42e-40 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu1g02692 Pkinase 1e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02692 - - gmx:100802636 402.519