Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02689 ATGGTGTTGTTCATTCTTGTAGGTTCAGTGGTGGAGCACAACATAGGTTGTTGTTTTAGGGCTCGTGGTTTGCCATTTGTTGATGGTGATGAAGATGGCATGATTAAGGTTTCGTCACAGGTTAGGGTTGGTCTATTTTTGTTCCGATTTGCAGGTGGCTATATGAGTGGAGGAGGCGCTTGCGGTGATGTTGTGAATGAGCATATGGTTGACGATGGTCTAATGGTGGCTAACGGCGTGGTGGCTTCATGGAAATTTTTAGTGGCGTGTTTATGGTTTTGGGTTTTTAGGCTTCGATGTGTGCAACTAGGCAACATTCTGATTTGTGGTGGTTGGCTATGGCACAACGTGGGAGAGGGTATGATGGCTGACGTGGCCGGTCAAAGGTCTAAAAAATGTAAGGATGAGGTTGAAAGCATGGTGCGTTGGGGTGATGGAAAAAAGTGGGAAAGCATGGGTTTTCTCATTTCCATCTTCACACCGCATCAAGAGGACCCCAAAACAAAAGGACGCAAAACTAACCGACCTTCTCGGAGCAGGAGGTGGCAGACCTTGGCCATAACCACAACCACAACCACAACCACAACCACGGCGGCGATGTCTTCTAATGCCGACTCCACCACGTCGCAGCTCTTGAATGTCACCATGGTAGCCGTTGACAAAGGCAAGAGCTGCGCCCACGCCTTTCGTTGGACCATCAAAAACATAGACAACCCCGTCATCATCGCACTCCATATCAAACACAAAAACATTACTCATCGTAGCACCGATGCTGTACCTCCCGACGAAGACGATGTAGCACATGTTTTCAACCACTTACGTCAAATGTGTCAAGGCAACAATGTTCAGTTGAAAGAAGCTGTGATCCATGACAGTGATATTGTGAGAGGAATAGTGGAATATGCACAGAGAAATCGCGTGAATACTATAGTCGTTGGTGCAGGCTCCTCCAACAAGACTAGTTTTGCAAGAAGTCTTTACCTGAGGAGTGGAAGCAAAAAATTAAAAGGCCATGTGTCAACAGGCGTAATGAAATCAGCACCAGATCATAGTTCTGTGTTTGTGATTTCAAAAGGGAAGATAGTGGGAGCTCGACCAGCAATACGACCGATGGTAAACATGGTTCAACCACCAAGTGAACATGCAAAAAGTGAGAACAGGACACATGCAATTAGAAGTGGGAGCACCAATGGAAGATCAGACAGATCACTTGTACTTGAAATGGCAAGGTCTTCTTCAGTTGGTCAATCAACGGAACACAGGTTAATATTTTGCCGCAGCTCGGATGGAAATGACTCTTCAAAGTCGAACAAGTTAGTGTCATCAGATGGAATTAGACAAGAGTGCGATCTATCAGATTCTCAATTCACAGAAGAGATGGAGAATGAGATGAAAAGGTTGAAGCTCAAACTCAAGCAAACTATGGACATGTTGAGTTCAGCTTGCAAAGAAGCAGTGTCAGCCGAAAGCAAGGCTAAAGAGATTAACCAACGGAAACTGGACGAGGAACGTATAGCTGAGGTGGCTAAGTTGTCTAAAGAGGCAGCACTTGCATTGGCAGAAAAGGAGAAAGTTAAAGCCAAAGCTGCCTTGGAAGCAGCTGAGGAAGCCATTAAGATGGTTGAAAAGGAAGCACAGAGAAGATTTAACGCAGAGATGAAGGCCAGAAGAGAGGCACATGAAAAGGATCGAGCATTGAATCAGTTGGCATGCAGGGAAATTCGATGCAGAAAATACAGTATAAGCGATGTTGAAGAGGCCACTCATAAGTTCTCCCCAGCATTGAAAGTAGGTGAAGGTGGATATGGACCCGTCTTTAAAGGCCAACTTGATCACACCCAAGTAGCAATCAAAATTTTGAACCCTGAAGCTACCCACGGAAGGAGGCAGTTCCAACAAGAGGTTGAGGTATTATGCAGCATAAGGCATCCTAACATGGTTCTCCTCATTGGTGCATGTCCTGAGTACGGATGTTTAGTGTATGAGTACTTAGAGAATGGTAGCTTAGAAGATAGATTACTGAGGAAAAATGATAGCCCTCCAATTCCATGGTGGAAACGTTTTGAAATAGCTGCTGAGATTGCAACTGCACTTCTTTTCCTTCATCAAACAAAGCCAGAACCAATTGTGCACAGGGACCTCAAACCTGCCAACATTCTCTTAGACAGGAATTTTGTGAGCAAAATCAGTGATGTGGGTCTTTCAAGACTAGTGCCAGCTTCCGTGGCTGATTCTGTCACACAGTATCACTTGACTGCTGCTGCTGGAACCTTTTGTTACATTGACCCTGAGTACCAACAAACTGGGATGCTAACAACAAAATCAGACGTATACTCATTGGGGATAATGCTTCTACAAATCATCACAGCCAAGGCTCCAATGGGGCTTGCTCACCATGTTCTGAAGGCCATTGAAGAGGGAACATTTTCAGAAATGCTCGATCCTTCGATCAGTGATTGGCCCATTGAAGAGACTCTTGAATTTGCCAAACTGTCACTGAAATGTGCAGAGCTCAGCAAAAAGGACAGGCCTGATCTTGCAACCGTGGTTGTGCCAAAGCTTAATCAGTTGAGAGAGTTTGGGTTAGCATCACAGAACAAGCTGAATCATAGTCACTCTCAACTTCCTCTCTCGCCTACAAGAACTCATCGATCAGATCCATAA 2664 0.4505 MVLFILVGSVVEHNIGCCFRARGLPFVDGDEDGMIKVSSQVRVGLFLFRFAGGYMSGGGACGDVVNEHMVDDGLMVANGVVASWKFLVACLWFWVFRLRCVQLGNILICGGWLWHNVGEGMMADVAGQRSKKCKDEVESMVRWGDGKKWESMGFLISIFTPHQEDPKTKGRKTNRPSRSRRWQTLAITTTTTTTTTTAAMSSNADSTTSQLLNVTMVAVDKGKSCAHAFRWTIKNIDNPVIIALHIKHKNITHRSTDAVPPDEDDVAHVFNHLRQMCQGNNVQLKEAVIHDSDIVRGIVEYAQRNRVNTIVVGAGSSNKTSFARSLYLRSGSKKLKGHVSTGVMKSAPDHSSVFVISKGKIVGARPAIRPMVNMVQPPSEHAKSENRTHAIRSGSTNGRSDRSLVLEMARSSSVGQSTEHRLIFCRSSDGNDSSKSNKLVSSDGIRQECDLSDSQFTEEMENEMKRLKLKLKQTMDMLSSACKEAVSAESKAKEINQRKLDEERIAEVAKLSKEAALALAEKEKVKAKAALEAAEEAIKMVEKEAQRRFNAEMKARREAHEKDRALNQLACREIRCRKYSISDVEEATHKFSPALKVGEGGYGPVFKGQLDHTQVAIKILNPEATHGRRQFQQEVEVLCSIRHPNMVLLIGACPEYGCLVYEYLENGSLEDRLLRKNDSPPIPWWKRFEIAAEIATALLFLHQTKPEPIVHRDLKPANILLDRNFVSKISDVGLSRLVPASVADSVTQYHLTAAAGTFCYIDPEYQQTGMLTTKSDVYSLGIMLLQIITAKAPMGLAHHVLKAIEEGTFSEMLDPSISDWPIEETLEFAKLSLKCAELSKKDRPDLATVVVPKLNQLREFGLASQNKLNHSHSQLPLSPTRTHRSDP 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02689 887 Pfam Protein tyrosine and serine/threonine kinase 596 850 IPR001245 GO:0004672|GO:0006468
Vimu1g02689 887 PANTHER OS02G0152300 PROTEIN 215 869 - -
Vimu1g02689 887 Coils Coil 508 551 - -
Vimu1g02689 887 Coils Coil 457 477 - -
Vimu1g02689 887 SUPERFAMILY Protein kinase-like (PK-like) 572 850 IPR011009 -
Vimu1g02689 887 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 216 340 - -
Vimu1g02689 887 ProSiteProfiles Protein kinase domain profile. 591 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02689 887 Gene3D Transferase(Phosphotransferase) domain 1 664 874 - -
Vimu1g02689 887 MobiDBLite consensus disorder prediction 377 402 - -
Vimu1g02689 887 Gene3D Phosphorylase Kinase; domain 1 561 663 - -
Vimu1g02689 887 Gene3D HUPs 202 358 IPR014729 -
Vimu1g02689 887 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 564 663 - -
Vimu1g02689 887 SMART serkin_6 591 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02689 887 Pfam Universal stress protein family 216 347 IPR006016 -
Vimu1g02689 887 ProSitePatterns Serine/Threonine protein kinases active-site signature. 709 721 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02689 Vimu-Chr1 38821080 38829103 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02689 284 861 Receptor kinase-like Gene Family AT5G12000 56.169 0.0 636
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vimu1g02689 PK_Tyr_Ser-Thr 1.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02689 - - var:108336981 1333.55